EY720622

Overview
NameEY720622
Unique NameEY720622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY720622 vs. ExPASy Swiss-Prot
Match: YHJC_ECOLI (Uncharacterized HTH-type transcriptional regulator yhjC OS=Escherichia coli (strain K12) GN=yhjC PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.166e-15
Identity = 43/130 (33.08%), Postives = 75/130 (57.69%), Query Frame = -1 
Query:    2 LDQFQPMKVFVRISERTSFTLAADDLNMPRATLTHTLNQFEAWLGTRLLERSTRRVRPTLDGEAYYLRCVQXXXXXXXXXXAFRSVAP--KGRLRVDLHGTLAKYFVIPALPQFMARYPEVELSISEADR 385
            +D+   M++F++++E  SF+ AAD   +P+ +++  +   E  LGT+LL+R+TRRV+ T +G  YY R              F+  A    G+LR+D+   +AK  ++P L +F+  +P +EL +S  DR
Sbjct:    1 MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDR 130
[Close]
BLAST of EY720622 vs. ExPASy Swiss-Prot
Match: Y1364_HAEIN (Uncharacterized HTH-type transcriptional regulator HI1364 OS=Haemophilus influenzae GN=HI1364 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 39/130 (30.00%), Postives = 65/130 (50.00%), Query Frame = -1 
Query:    2 LDQFQPMKVFVRISERTSFTLAADDLNMPRATLTHTLNQFEAWLGTRLLERSTRRVRPTLDGEAYYLRCVQXXXXXXXXXXAFRSVAP--KGRLRVDLHGTLAKYFVIPALPQFMARYPEVELSISEADR 385
            +D+   + +F ++ E  SFTLAA   N+  A  +  ++Q E  L TRLL+R+TR++ PT  G  YY RC            +   +    +G L + +       F+ P LP FMA++P + + +   D+
Sbjct:    1 MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMMYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIEVEFNDK 130
The following BLAST results are available for this feature:
BLAST of EY720622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YHJC_ECOLI2.166e-1533.08Uncharacterized HTH-type transcriptional regulator... [more]
Y1364_HAEIN1.113e-1130.00Uncharacterized HTH-type transcriptional regulator... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-012-B01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720622 ID=EY720622; Name=EY720622; organism=Citrus sinensis; type=EST; length=880bp
AGCGGTCCGCCTCGCTGATGGACAGCTCGACTTCCGGGTAGCGCGCCATG
AATTGCGGCAGCGCCGGGATCACGAAGTACTTGGCCAGAGTGCCGTGCAA
ATCCACCCGCAGGCGGCCCTTGGGGGCCACCGAGCGGAAGGCCAGTTCCG
CCTCTTCCAACTCCGCCAGCAGTTGCACACAGCGCAGGTAATAGGCCTCG
CCATCGAGGGTCGGGCGGACGCGGCGGGTACTGCGCTCCAGCAGGCGCGT
GCCGAGCCAGGCCTCGAACTGGTTGAGGGTGTGGGTCAGGGTGGCACGCG
GCATGTTCAGGTCATCGGCCGCCAGCGTGAAACTGGTGCGTTCGGAAATC
CTCACGAACACTTTCATCGGTTGGAACTGGTCCAGGGCGCGTCTCCATTG
GTTGGGCGATTCTTGAACAGTCGAGGCAACTCTGGGGCGTTTATCGGCCT
GGGGGGAAGGTGAATGTGGGGGGGATCGGGCGCAGTCCGCGGGGAGAGGG
AGGGTGAGTACGCGGGGGGGGTGGGGGGCGGGACGGTGAGCGGGGGGGCG
GCGGGGGGGGGGGAGAAGGGGATCAAGCGGGAGGTCGCGCGCGGCGGGGT
GCGGCCGCTGCCCCCCGCGCGCCGCCCCTCGCGGGGAGCGAGGCGAGGCC
GCAGCTGCGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGTTGAG
TGGCGGAGTGGGGCGGGGTCCTGGGGGGGGGGCGTGTGGCGGGTCTGGAG
GAAGGGGACTGAGGGGGGGGGACAGGGGGGGGAGGGGGGGCGGGCGAGGG
GGGGCGGGCGGGGGAGGGGAGGGGGCGCGTGGGGGGCCGTGGGTAGACGG
GGGGGGGAAGGGGGGAGGGGGAGGGGGGGC
back to top