EY720557

Overview
NameEY720557
Unique NameEY720557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720557_ssr557 microsatellite EY720557_ssr557:557..571. BLAST: Citrus ESTs to SwissProt
Csv1_Contig11262 contig Csv1_Contig11262:20..888. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_ECOLI (Primosomal protein N' OS=Escherichia coli (strain K12) GN=priA PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.252e-33
Identity = 66/149 (44.30%), Postives = 92/149 (61.74%), Query Frame = -3
Query:    4 PAMK-LVDTRRLPMKHGMSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRLQCHHCGYQAPVPHACPECGDQDLAPMGRGTQRVEEHLAELFPEARILRIDADSTRKKGSAEALFASVHAG 447
            PA++ ++D +   ++ G++P L+  +   L    Q ++FLNRRGFAP L C  CGW++ CPRC  +  LH+     H L+CHHC  Q PVP  CP CG   L P+G GT+++E+ LA LFP   I RID D+T +KG+ E   A VH G
Sbjct:  386 PAIQHVLDLKGQKVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQ---HHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEVHRG 531          
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_BACSU (Primosomal protein N' OS=Bacillus subtilis GN=priA PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.108e-31
Identity = 63/154 (40.91%), Postives = 98/154 (63.64%), Query Frame = -3
Query:    1 LPAMKLVDTRRLPMKHG----MSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRLQCHHCGYQAPVPHACPECGDQDLAPMGRGTQRVEEHLAELFPEARILRIDADSTRKKGSAEALFASVHAGE 450
            +P + LVD R   +++G     S +L+E L   +A+ EQ+++FLN+RG++  + C+ CG+V  CP C      HR    G RL+CH+CG++ PVPH CPEC  + +   G GTQRVEE L ++ P AR++R+D D+T +KG+ E L ++   G+
Sbjct:  457 MPEVSLVDMRE-ELRNGNRSMFSVELMEKLEETIAKGEQAVLFLNKRGYSSFVMCRDCGYVPQCPHCDISMTYHRY---GQRLKCHYCGHEEPVPHTCPECASEHIRFFGTGTQRVEEELTKVLPSARVIRMDVDTTSRKGAHEKLLSAFGEGK 606          
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_HAEIN (Primosomal protein N' OS=Haemophilus influenzae GN=priA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.577e-29
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = -3
Query:    1 LVDTRRLPMKHGMSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRLQCHHCGYQAPVPHACPECGDQDLAPMGRGTQRVEEHLAELFPEARILRIDADSTRKKGSAEALFASVHAGE 435
            ++D +   +++G+S  LLE + A L +  Q L+FLNRRGFAPVL C  CGW++ CP C      H+     + L+CHHCG Q  +P  C +CG   L   G GT+++EE L  LFP   + RID DST +KG  E     +  G+
Sbjct:  392 VIDLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQ---HQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDSTSRKGKLEGYLEDIQQGK 533          
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_RHORU (Primosomal protein N' OS=Rhodospirillum rubrum GN=priA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.150e-27
Identity = 63/126 (50.00%), Postives = 79/126 (62.70%), Query Frame = -3
Query:   25 MSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRLQCHHCGYQAPVPHACPECGDQD-LAPMGRGTQRVEEHLAELFPEARILRIDADSTRKKGSAEAL 399
            +SP L+ A+   LA  EQ L+FLNRRG+AP+  C+SCG    CPRCTA+ V HR  G   RL+CHHCGYQ P+P  CP CG  D LAP G G +R+ E  A  FP+AR+    +D+      A AL
Sbjct:  487 LSPPLITAVEETLAAGEQVLLFLNRRGYAPLTLCRSCGHRLKCPRCTAWLVEHRRDG---RLRCHHCGYQQPIPETCPACGVADSLAPCGPGVERLAEEAAHRFPKARMDVAASDTVTGPKEAAAL 609          
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_SYNY3 (Primosomal protein N' OS=Synechocystis sp. (strain PCC 6803) GN=priA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.850e-25
Identity = 61/155 (39.35%), Postives = 86/155 (55.48%), Query Frame = -3
Query:    1 LPAMKLVDTRRLPMKHG----MSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRL-QCHHCGYQAPVPHACPECGDQDLAPMGRGTQRVEEHLAELFPEARILRIDADSTRKKGSAEALFASVHAGE 450
            LP +++VD R   +K G     S  L  ALG   A+++Q ++F+NRRG +  + C+SCG+V  CP C      H   G G  L +CH+C +    P  CPEC    L   G GTQ+V E L + FP+ R +R D+D+TR+KG+  AL      GE
Sbjct:  484 LPPVQIVDMRA-ELKQGNRSIFSRALQTALGELKAKQQQGILFINRRGHSTFVSCRSCGYVLECPNCDVSLSYHYVQGNGQPLLRCHYCNHAEIQPKVCPECSSPYLKFFGSGTQKVTEALTQEFPDLRWIRFDSDTTRRKGAHRALLDQFQRGE 637          
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_RICBR (Primosomal protein N' OS=Rickettsia bellii (strain RML369-C) GN=priA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.496e-24
Identity = 55/137 (40.15%), Postives = 89/137 (64.96%), Query Frame = -3
Query:   49 LPAMKLVDTRR--LPMKHGMSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRLQCHHCGYQAPVPHACPEC-GDQDLAPMGRGTQRVEEHLAELFPEARILRIDADSTR 450
            LP ++++D  +  LP    +S  L++A+   L  KEQ+L+FLNRRG+AP++ C+SCG    C  C+++ V+H+++    +L+CHHCGYQ+ + ++CPEC  D+ LA  G G +R+EE    LFP ++I  I  D  +
Sbjct:  306 LPNIEMIDMTKEELPKNCYLSNILIKAIKNNLENKEQTLLFLNRRGYAPLMLCKSCGHKFTCKYCSSWMVVHKSS---KKLECHHCGYQSKIFNSCPECLEDESLAICGPGIERIEEEAKTLFPNSKIAVISKDHVK 439          
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_RICCN (Primosomal protein N' OS=Rickettsia conorii GN=priA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.604e-23
Identity = 53/137 (38.69%), Postives = 85/137 (62.04%), Query Frame = -3
Query:   49 LPAMKLVDT--RRLPMKHGMSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRLQCHHCGYQAPVPHACPEC-GDQDLAPMGRGTQRVEEHLAELFPEARILRIDADSTR 450
            LP ++++D    +L     +S  L+EA+   L  K+Q L+FLNRRG+AP++ C++CG+   C  C+++ V+H+      +L+CHHCGYQ+ +  +CPEC  D+ L   G G +R+EE    LFPE++I  I  D  +
Sbjct:  306 LPNIEIIDMTKEKLSKNSYLSKLLIEAIKGNLDNKKQVLLFLNRRGYAPLMLCKACGYRLTCKFCSSWMVVHKAT---KKLECHHCGYQSKIFSSCPECLEDETLTICGPGIERIEEEAKALFPESKIAVISKDHAK 439          
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_RICPR (Primosomal protein N' OS=Rickettsia prowazekii GN=priA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.147e-23
Identity = 53/137 (38.69%), Postives = 85/137 (62.04%), Query Frame = -3
Query:   49 LPAMKLVDT--RRLPMKHGMSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRLQCHHCGYQAPVPHACPEC-GDQDLAPMGRGTQRVEEHLAELFPEARILRIDADSTR 450
            LP ++++D    +LP    +S  L++A+   L  K+Q+L+FLNRRG+AP++ C++CG    C  C+A+ VLH+      +L+CHHCGYQ+ +  +CPEC  D+ L   G G +R+ E    LFP+++I  I  D  +
Sbjct:  306 LPNIEIIDMTKEKLPKNSYLSKILIDAIKGNLENKKQALLFLNRRGYAPLMLCKACGHRFTCKFCSAWMVLHKAT---KKLECHHCGYQSKIFSSCPECLEDETLTICGPGIERIAEEAMLLFPKSKIAVISKDHAK 439          
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_RICTY (Primosomal protein N' OS=Rickettsia typhi GN=priA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.028e-23
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = -3
Query:   49 LPAMKLVDT--RRLPMKHGMSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRLQCHHCGYQAPVPHACPEC-GDQDLAPMGRGTQRVEEHLAELFPEARILRIDADSTR 450
            LP ++++D    +LP    +S  L++A+   L  K+Q L+FLNRRG+AP++ C++CG    C  C+A+ VLH+       L+CHHCGYQ+ +  +CPEC  D+ L   G G +R+EE    LFP+++I  I  D  +
Sbjct:  306 LPNIEIIDMTKEKLPKNSYLSKILIDAIKGNLENKKQVLLFLNRRGYAPLMLCKACGHRFTCRFCSAWMVLHKAT---KTLECHHCGYQSKIFSSCPECLEDETLTICGPGIERIEEEAMLLFPKSKIAVISKDHAK 439          
BLAST of EY720557 vs. ExPASy Swiss-Prot
Match: PRIA_RICFE (Primosomal protein N' OS=Rickettsia felis GN=priA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.204e-22
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = -3
Query:   49 LPAMKLVDT--RRLPMKHGMSPQLLEALGARLARKEQSLIFLNRRGFAPVLHCQSCGWVSNCPRCTAFTVLHRTAGRGHRLQCHHCGYQAPVPHACPEC-GDQDLAPMGRGTQRVEEHLAELFPEARILRIDADSTR 450
            LP ++++D    +L     +S  L+EA+   L  K+Q L+FLNRRG+AP++ C++CG    C  C+++ V+H+      +L+CHHCGYQ+ +  +CPEC  D+ L   G G +R+EE    LFPE +I  I  D  +
Sbjct:  306 LPNIEIIDMTKEKLSKNSYLSKILIEAIKDNLDNKKQVLLFLNRRGYAPLMLCKACGHRFTCKFCSSWMVVHKAT---KKLECHHCGYQSKIFSSCPECLEDETLTICGPGIERIEEEAKALFPENKIAVISKDHAK 439          
The following BLAST results are available for this feature:
BLAST of EY720557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PRIA_ECOLI2.252e-3344.30Primosomal protein N' OS=Escherichia coli (strain ... [more]
PRIA_BACSU2.108e-3140.91Primosomal protein N' OS=Bacillus subtilis GN=priA... [more]
PRIA_HAEIN2.577e-2941.38Primosomal protein N' OS=Haemophilus influenzae GN... [more]
PRIA_RHORU3.150e-2750.00Primosomal protein N' OS=Rhodospirillum rubrum GN=... [more]
PRIA_SYNY33.850e-2539.35Primosomal protein N' OS=Synechocystis sp. (strain... [more]
PRIA_RICBR2.496e-2440.15Primosomal protein N' OS=Rickettsia bellii (strain... [more]
PRIA_RICCN3.604e-2338.69Primosomal protein N' OS=Rickettsia conorii GN=pri... [more]
PRIA_RICPR6.147e-2338.69Primosomal protein N' OS=Rickettsia prowazekii GN=... [more]
PRIA_RICTY8.028e-2339.42Primosomal protein N' OS=Rickettsia typhi GN=priA ... [more]
PRIA_RICFE5.204e-2238.69Primosomal protein N' OS=Rickettsia felis GN=priA ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-011-A12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720557 ID=EY720557; Name=EY720557; organism=Citrus sinensis; type=EST; length=869bp
CTCGCCCGCGTGAACGGACGCGAACAGCGCCTCGGCGCTGCCCTTCTTGC
GGGTGCTGTCGGCGTCGATGCGCAGGATGCGCGCCTCGGGAAACAGCTCG
GCCAGGTGTTCCTCGACCCGCTGCGTGCCGCGCCCCATCGGCGCCAGGTC
CTGGTCGCCGCATTCAGGGCAGGCGTGCGGCACCGGCGCCTGGTAGCCGC
AGTGGTGGCATTGCAGGCGATGGCCGCGGCCGGCCGTGCGGTGCAGCACC
GTGAAGGCGGTGCAGCGCGGGCAATTGCTGACCCAGCCGCAGGACTGGCA
GTGCAGCACCGGCGCGAAACCGCGCCGGTTCAGGAAGATCAGCGATTGCT
CCTTGCGCGCCAGCCGTGCGCCGAGCGCCTCCAGCAACTGCGGCGACATG
CCGTGCTTCATCGGCAGGCGGCGCGTGTCCACCAGCTTCATGGCCGGCAG
CGACTGGACCGGGGGGCGCGCGGCGGGGCCAGGCGAAGGGTAGGGACCCT
CGTGGAGAGGCGGGCGCAGGGCGGCGTGCAGGAGAGGCAGGGCACCCCGA
CCCGGTCGGGGCGGGGCGGGGGCCTGGGCGGCGTGGTTGGCGAGGGCGGG
TGGGGGGGGGGGGGGGCGGGAGAGGATGATGTGCCGGGGGGTCGGGGCGC
GTGGGGGGCGGGGCGGGGTGGGGGCCGGGGTGGGGTGTAGGTGTGGGTCG
GGGGCGAGGGCGGTTTGCGGGGGGGTGTGGGGTGAGGTGTGAGTAAGGGG
AGGCGGTGGGGCGGTCGGGGGCTGTGGCTTAGCCTGTCGGGGTGCGCGGG
GTCTACGCACGAGGGGCACTGTGCCGGTCTAATTGGAGGTCAGGTTTGTG
GTGGTGTTTAGGTGTTGGC
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