EY720532

Overview
NameEY720532
Unique NameEY720532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11198 contig Csv1_Contig11198:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY720532 vs. ExPASy Swiss-Prot
Match: SKI28_ARATH (F-box protein SKIP28 OS=Arabidopsis thaliana GN=SKIP28 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.004e-36
Identity = 77/194 (39.69%), Postives = 111/194 (57.22%), Query Frame = 2 
Query:   11 AGLSPQGVIEAVEKLSENDHTLEILHISGVYNITKEHLRTLHSHLKLNSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPSCSEVRMVFDCSKQLCKGKPPARCCRGCYHCIPRCAECGGCI--QPEEMEDAVC--NDMLCSDCWLQLPKCNLCNKPYC-----RQHANLGSNSSCSSGFICDICQYQ 565
            +GL+P+G++E VE LS+N+H LE LHI+GV   TK+HL  L+++L                              ++ +ID+E+CP C EVRM+  CS++ C  K   R CRGC+ CIPRCAEC  C+     E ++A C  +D+LC +CWL LPKC  CNKPYC     R+H    ++++    F C+ C Y+
Sbjct:  118 SGLTPEGIMECVESLSKNNHKLETLHINGVNGFTKQHLSALYTYLS-----------------------------SEGTIDLEVCPKCDEVRMIPSCSRESCNQKQ--RKCRGCWLCIPRCAECAVCLVGSDTESQEAACGNDDVLCLECWLVLPKCRFCNKPYCTNHSSRRHEIAITDAASRPSFECEACYYR 280
[Close]
BLAST of EY720532 vs. ExPASy Swiss-Prot
Match: SKI14_ARATH (F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   83 LHISGVYNITKEHLRTLHSHLKL-NSSRQNEQKRQPILYHKARHYPVLVNRENDHSIDVEICPSCSEVRMVFDCSKQLCKGKPP-ARCCRGCYHCIPRCAECGGCIQPEEMEDAVCNDMLCSDCWLQLPKCNL 475
            L + G++ +TK+H   L   L + N  +Q  QK  P  YH+       V+ ++D ++D+E+CP C   ++V+DC  + CKGK   +  CR C  CI RC  CG CI   E E+  C ++LC+ C    PK  L
Sbjct:  326 LQLRGLFGVTKDHYDELIDLLNIDNKVKQTIQK--PRFYHRGE---ACVSCDDDRALDIEMCPKCQNFKLVYDCPAEDCKGKKKGSEECRACSLCIQRCYHCGRCIIDTEYEEMFCLELLCAVCSKPTPKLTL 453
The following BLAST results are available for this feature:
BLAST of EY720532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SKI28_ARATH1.004e-3639.69F-box protein SKIP28 OS=Arabidopsis thaliana GN=SK... [more]
SKI14_ARATH1.610e-1836.09F-box protein SKIP14 OS=Arabidopsis thaliana GN=SK... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-010-G04-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720532 ID=EY720532; Name=EY720532; organism=Citrus sinensis; type=EST; length=748bp
CCACGCGTCCGCAGGCTTATCCCCTCAGGGAGTCATTGAAGCTGTGGAGA
AACTATCCGAAAACGACCACACGCTGGAAATCTTGCACATTAGTGGCGTC
TACAACATTACAAAAGAACACCTCAGGACACTTCACTCCCATTTGAAATT
GAACTCATCTCGACAAAATGAACAAAAGCGGCAGCCTATTCTGTATCATA
AAGCCAGACACTACCCGGTACTTGTAAACAGAGAAAATGACCATAGCATC
GACGTTGAAATATGTCCGAGCTGCAGTGAAGTAAGAATGGTTTTTGACTG
CTCGAAGCAGCTGTGCAAGGGAAAGCCGCCGGCTCGTTGCTGCAGGGGAT
GCTACCATTGCATTCCAAGGTGTGCAGAGTGTGGTGGATGCATCCAGCCT
GAAGAGATGGAAGATGCTGTTTGCAATGATATGTTGTGCTCAGATTGTTG
GCTTCAACTTCCCAAATGCAATCTGTGTAACAAGCCATATTGTAGGCAGC
ATGCCAATCTGGGAAGTAACTCTTCATGCTCCTCTGGATTTATTTGTGAC
ATTTGCCAGTACCAGAACCAGAAATGTTACTCTGAAGAATTTTAAATTAG
AGGAATCTTAGTTTAGATNCACACAGTTTTGTATTTATTGTACATTNCAT
ATAAGATACTGAATGATGAANNGTGTATACATACTANTTTCTTTGTAGAA
GTAACAGCAATTTCAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top