EY720504

Overview
NameEY720504
Unique NameEY720504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.448e-54
Identity = 118/203 (58.13%), Postives = 135/203 (66.50%), Query Frame = 1
Query:  124 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXLDISVKPXTQVIYSKYAGTELEFNGANHLI*GRRTVXGILETDENQDLRPLNDRSFHQVXXXXXXXXXXXXXXXXNXEKPPIGMVIAVEPG 729
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPSTAQ+KPQ GEVVAVGEG+T+GK  +DI+V    Q+IYSKYAGTE+EFN   HLI     + GILET++ +DL+PLNDR F +V                  EKP IG VIAV PG
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPG 203          
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.915e-41
Identity = 97/218 (44.50%), Postives = 129/218 (59.17%), Query Frame = 1
Query:  124 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXLDISVKPXTQVIYSKYAGTELEFNGANHLI*GRRTVXGILETDENQDLRPLNDRSFHQVXXXXXXXXXXXXXXXXNXEKPPIGMVIAVEPGLXMRKVIGNSYP 765
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+ AQ KPQ+GEVVA+G GK VG   L ++VK   +V+YSKY GTE+E +G++HLI     + GILETD+ +DL+PLNDR   +V                + EKP  G V+A  PG+   +  GN  P
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEE--GNRIP 215          
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18
Identity = 43/95 (45.26%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  304 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXLDISVKPXTQVIYSKYAGTELEFNGANHLI*GRRTVXGILETDE 588
            IKPL DRV++K +  EEKT+ G+++P TA+ KPQ G V+AVG G+    T +++SVK   +V+Y KYAGTE+  +G  +LI     + GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100          
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.225e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  304 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXLDISVKPXTQVIYSKYAGTELEFNGANHLI*GRRTVXGILE 579
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +    +++ VK   +VI+SKYAGTE++ +G  +L+     +  I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.225e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  304 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXLDISVKPXTQVIYSKYAGTELEFNGANHLI*GRRTVXGILE 579
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +    +++ VK   +VI+SKYAGTE++ +G  +L+     +  I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.225e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  304 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXLDISVKPXTQVIYSKYAGTELEFNGANHLI*GRRTVXGILE 579
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +    +++ VK   +VI+SKYAGTE++ +G  +L+     +  I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.074e-17
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  301 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXLDISVKPXTQVIYSKYAGTELEFNGANHLI 546
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ GEVVAVG GK      + + VK   +VIYSKYAGTE++++G  +LI
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLI 83          
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10_DESHD (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.074e-17
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  301 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXLDISVKPXTQVIYSKYAGTELEFNGANHLI 546
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ GEVVAVG GK      + + VK   +VIYSKYAGTE++++G  +LI
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLI 83          
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.403e-17
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  298 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXL-DISVKPXTQVIYSKYAGTELEFNGANHLI*GRRTVXGILE 579
            +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ GEVVAVG GK   +  L  + +K   +V+YSKYAGTE++     +++   R +  I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103          
BLAST of EY720504 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.403e-17
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  298 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTXL-DISVKPXTQVIYSKYAGTELEFNGANHLI*GRRTVXGILE 579
            +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ GEVVAVG GK   +  L  + +K   +V+YSKYAGTE++     +++   R +  I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103          
The following BLAST results are available for this feature:
BLAST of EY720504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
CH10C_ARATH2.448e-5458.1320 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL6.915e-4144.5020 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_RHOMR2.165e-1845.2610 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_THEPX8.225e-1847.8310 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP38.225e-1847.8310 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR8.225e-1847.8310 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_DESHY1.074e-1754.8810 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_DESHD1.074e-1754.8810 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_SYNJB1.403e-1749.4710 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_SYNJA1.403e-1749.4710 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-010-D07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720504 ID=EY720504; Name=EY720504; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTAT
CAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTC
GCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCA
TCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACC
GTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTT
TCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACT
TCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGA
GGAGAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGC
CTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAG
ACTANACTGGACATATCTGTGAAGCCTGNGACCCAGGTCATCTATTCGAA
GTATGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATGAG
GGAGGAGGACNGTANTTGGCATTCTTGAAACAGATGAAAATCAGGATCTT
AGGCCCCTTAATGACAGAAGTTTTCATCAGGTTGCTGAGGCTGAGGAGAC
ACTGCTGGANGGTTGGTTGTTGACGGAGGGCAACNAGGAGAAACCTCCCA
TTGGAATGGTCATTGCTGTGGAACCCGGTCTCTANATGAGGAAAGTTATA
GGAAACTCTTATCCATGGCTCCGGGGAACCAGGGGATGTATCCCAAGTAT
GCACGGAATGATTCCAAGGGCACTGATGGTACCACGGAATTGGCTTTAAA
AGGTTCGGAGTGAAGGGTGTGCCCTCTGAATGGTCGGGGGTAATTGA
back to top