EY720489

Overview
NameEY720489
Unique NameEY720489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720489_ssr173 microsatellite EY720489_ssr173:173..190. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY720489 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.258e-47
Identity = 95/157 (60.51%), Postives = 119/157 (75.80%), Query Frame = 1
Query:  199 MTIKPVVRIAERKLIVKDRTILTGVPDNLITTSGSTSGPVEGVFIGAAFDEESSRHVLPIGALRDIRFLACFRFKLWWMAXKMGXHGSEIPLETQFLLVETKEGSHIESNDGN--EDDQIVYTVFLPLIEGSFPLGWGGMQATSSSCV*KGGDSETK 663
            MTIKP VRI++  LI+K+RTILTGVPDN+ITTS S +GPVEGVF+GA F++E S+H++PIG LR+ RF++CFRFKLWWMA +MG  G +IP ETQFLLVE+ +GSH+ES+  N  E +Q VYTVFLPLIEGSF     G          + GD +TK
Sbjct:    1 MTIKPAVRISDGNLIIKNRTILTGVPDNVITTSASEAGPVEGVFVGAVFNKEESKHIVPIGTLRNSRFMSCFRFKLWWMAQRMGEMGRDIPYETQFLLVESNDGSHLESDGANGVECNQKVYTVFLPLIEGSFRSCLQGNVNDEVELCLESGDVDTK 157          
BLAST of EY720489 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.031e-32
Identity = 67/131 (51.15%), Postives = 89/131 (67.94%), Query Frame = 1
Query:  199 MTIKPVVRIAERKLIVKDRTILTGVPDNLITTSGSTSGPVEGVFIGAAFDEESSRHVLPIGALRDIRFLACFRFKLWWMAXKMGXHGSEIPLETQFLLVETKEGSHIESNDGNEDDQIVYTVFLPLIEGSF 591
            MTI   + +    L+V+ +TILT +PDN+I T  + +G V G FIGA F++  S HV PIG L  +RF+ CFRFKLWWM  +MG  G +IPLETQF+L+E+K+   +E N   +D   VYTVFLPL+EG F
Sbjct:    1 MTITSNISVQNDNLVVQGKTILTKIPDNIILTPVTGNGFVSGSFIGATFEQSKSLHVFPIGVLEGLRFMCCFRFKLWWMTQRMGSCGKDIPLETQFMLLESKD--EVEGN--GDDAPTVYTVFLPLLEGQF 127          

HSP 2 Score: 22.3274 bits (46), Expect = 7.031e-32
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  606 GNASDELELCLEGG 647
            GN  +E+E+C E G
Sbjct:  133 GNEKNEIEICFESG 146          
BLAST of EY720489 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.889e-27
Identity = 60/151 (39.74%), Postives = 85/151 (56.29%), Query Frame = 1
Query:  199 MTIKPVVRIAERKLIVKDRTILTGVPDNLITTSGSTSGPVEGVFIGAAFDEESSRHVLPIGALRDIRFLACFRFKLWWMAXKMGXHGSEIPLETQFLLVETKEGSHIESNDGNEDDQIVYTVFLPLIEGSFPLGWGGMQATSSSCV*KGGD 651
            MT+   + + +  L+V    +L GVP+N++ T  S +  ++G FIG   D+  S  V  +G L D+RF+  FRFKLWWM  +MG +G EIP ETQFL+VE  +GS +    G  D    Y VFLP++EG F     G +A       + GD
Sbjct:    1 MTVGAGISVTDSDLVVLGHRVLHGVPENVLVTPASGNALIDGAFIGVTSDQTGSHRVFSLGKLEDLRFMCVFRFKLWWMTQRMGTNGKEIPCETQFLIVEANQGSDL----GGRDQSSSYVVFLPILEGDFRAVLQGNEANELEICLESGD 147          
BLAST of EY720489 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  220 RIAERKLIVKDRTILTGVPDNLITTSGSTSGPVEGV--------FIGAAFD-EESSRHVLPIGALRDIRFLACFRFKLWWMAXKMGXHGSEIPLETQFLLVETKEGSHIESNDGNEDDQIVYTVFLPLIEGSF 591
            R+ +  L+   + +LT VP N+  TS       +GV        FIG   D E  S HV  IG L++IRF++ FRFK+WW    +G +G +I  ETQ ++++ + GS  +S  G+   +  Y + LPL+EGSF
Sbjct:   23 RLEDSTLLANGQVVLTDVPVNVTLTSSPYLVDKDGVPLDVSAGSFIGFNLDGEPKSHHVASIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDIENETQIIILD-QSGS--DSGPGSGSGR-PYVLLLPLLEGSF 151          
BLAST of EY720489 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 45/139 (32.37%), Postives = 64/139 (46.04%), Query Frame = 1
Query:  232 RKLIVKDRTILTGVPDNLITTSGSTSGPV-------------------EGVFIGAAFDEESSRHVLPIGALRDIRFLACFRFKLWWMAXKMGXHGSEIPLETQFLLVETKEGSHIESNDGNEDDQIVYTVFLPLIEGSF 591
            R  +V     LT VP N+ TT+ ST  P                    +G F+G    E  S HV+P+G L+ I+F + FRFK+WW    +G +G E+  ETQ L++           D N      Y + LP++E SF
Sbjct:   35 RNFLVNGHPFLTQVPPNITTTTTSTPSPFLDFKSNKDTIANNNNTLQQQGCFVGFNTTEAKSHHVVPLGKLKGIKFTSIFRFKVWWTTHWVGTNGHELQHETQILIL-----------DKNISLGRPYVLLLPILENSF 162          
BLAST of EY720489 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 42/134 (31.34%), Postives = 62/134 (46.27%), Query Frame = 1
Query:  211 PVVRIAERKLIVKDRTILTGVPDNLITTSGSTSGP-------VEGVFIGAAFDEESSRHVLPIGALRDIRFLACFRFKLWWMAXKMGXHGSEIPLETQFLLVETKEGSHIESNDGNEDDQIVYTVFLPLIEGSF 591
            P   +  + L V     L  VP N+  T  ST  P         G F+G        RHV+PIG LRD RF++ FRFK+WW    +G +G ++  ETQ ++++            +      Y + LP++EG F
Sbjct:   26 PRFTLKGKDLAVDGHPFLLDVPANIRLTPASTLVPNSDVPAAAAGSFLGFDAPAAKDRHVVPIGKLRDTRFMSIFRFKVWWTTHWVGTNGRDVENETQMMILDQ------SGTKSSPTGPRPYVLLLPIVEGPF 153          
The following BLAST results are available for this feature:
BLAST of EY720489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RFS6_ARATH1.258e-4760.51Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH7.031e-3251.15Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH1.889e-2739.74Probable galactinol--sucrose galactosyltransferase... [more]
RFS5_ARATH1.553e-1336.84Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA1.006e-1232.37Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS_ORYSJ4.995e-1231.34Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-010-C02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720489 ID=EY720489; Name=EY720489; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGCGTTCACATCGTGCTCTCTTAACAGCATCTCATTCTCAA
GCTCAAAATCAAAACTCGTCGTTTTAACCAAGAAGCATTCTGATTCTGAT
ATTCTTCCAATCCTTCATTCTCGGTATTCACTTTTAAGAGAGACGAGCTA
ATTACACCTCGAAAGAAGCTTCAAGAAGAAGAAGAAGAAGTTAAAGAGAT
GACGATCAAACCAGTAGTTAGGATCGCCGAGAGGAAGCTAATTGTAAAGG
ATCGTACGATCCTTACCGGAGTGCCGGACAATTTGATCACGACGTCCGGT
TCGACTTCCGGTCCCGTCGAGGGAGTCTTCATTGGCGCGGCTTTCGATGA
AGAAAGCAGCAGGCACGTGCTCCCCATCGGGGCTTTGCGTGACATTCGTT
TCTTGGCCTGTTTCAGGTTCAAGTTGTGGTGGATGGCTCANAAAATGGGC
GANCATGGCAGTGAAATCCCACTCGAGACTCAGTTCTTATTGGTGGAAAC
CAAAGAGGGGTCCCACATCGAATCCAACGATGGAAACGAAGACGATCAGA
TCGTCTACACTGTTTTCCTCCCTCTAATTGAAGGCTCATTCCCCCTTGGG
TGGGGGGGAATGCAAGCGACGAGCTCGAGTTGTGTTTAGAAGGGGGGGGA
TTCCGAAACCAAAGGGGCGGCATTTAGTCGCGCTTGGGGGGGGGGANCCC
GGCGGAGGAGCGGTGGGGGAGGGGCGGGGAAGGAACAGGGGGAGGGATTG
GCGGGGCGAGGCCTTGGCGGGGGGGAGGGGAGAGAGAGGGCGGGGGATCG
GGGGAGATCTGGGGGGGGGGGCGGGGCGGCGGGTTGGGCCGCGAGGGGAG
GTGGGAGAGGGGGGGGCGGAGGGCGGCGTGC
back to top