EY720436

Overview
NameEY720436
Unique NameEY720436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.132e-48
Identity = 109/169 (64.50%), Postives = 122/169 (72.19%), Query Frame = 3
Query:   69 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSV--SLRRARTPKIYAAKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVK 569
            MASTFTA SSI SM+APN   TD                    FGRRQ+V   LRR+    + AAK+LHFNKDG  ++KL  GVNKLA LVGVTLGPKGRNVVL SKYG+P+IVNDGVTVA+EVE EDPVENIGAKLVRQAAAKTNDLAGDGTT  + L +G   +GVK
Sbjct:    1 MASTFTATSSIGSMVAPNAHKTDKKLMNKLSSSS---------FGRRQNVFPKLRRSSPAVVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVK 160          

HSP 2 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  524 TSVVLAQGLIPEGCKVXAXGANPVLITRGLEKTSQALVSELKQMSKEVEDIEL 682
            TSVVLAQG I EG KV A GANPVLITRG+EKT++ALV+ELK+MSKEVED EL
Sbjct:  146 TSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVAELKKMSKEVEDSEL 198          
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 4.301e-48
Identity = 108/169 (63.91%), Postives = 122/169 (72.19%), Query Frame = 3
Query:   69 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVSLRRARTPK--IYAAKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVK 569
            MASTFTA SSI SM+APNG  +D                    FGRRQSV  R  R+    + AAK+LHFNKDG  +++L  GVNKLA LVGVTLGPKGRNVVL SKYG+P+IVNDGVTVA+EVE EDPVENIGAKLVRQAAAKTNDLAGDGTT  + L +G   +GVK
Sbjct:    1 MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSS---------FGRRQSVCPRPRRSSSAIVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVK 160          

HSP 2 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  524 TSVVLAQGLIPEGCKVXAXGANPVLITRGLEKTSQALVSELKQMSKEVEDIEL 682
            TSVVLAQG I EG KV A GANPVLITRG+EKT++ALV+ELK+MSKEVED EL
Sbjct:  146 TSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVEDSEL 198          
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.700e-42
Identity = 92/116 (79.31%), Postives = 100/116 (86.21%), Query Frame = 3
Query:  225 RRARTPKIYA-AKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVK 569
            R+ R  K+ A AK+LHFNKDG A+KKL NGVNKLA LVGVTLGPKGRNVVL SKYG+PKIVNDGVTVAKEVE EDPVENIGAKLVRQAAAKTNDLAGDGTT  + L +GL  +GVK
Sbjct:   39 RKNRNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVK 154          

HSP 2 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 2
Query:  524 TSVVLAQGLIPEGCKVXAXGANPVLITRGLEKTSQALVSELKQMSKEVEDIEL 682
            TSVVLAQGLI EG KV A GANPVLITRG+EKTS+ALV+ELK+MSKEVED EL
Sbjct:  140 TSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVEDSEL 192          
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: CH60_LACDB (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=groL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.466e-27
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  255 AKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVKS 572
            AKD+ F++D  A + L NGVNKLA  V  TLGPKGRNVVL   YGAP I NDGVT+AK +E ED  ENIGAKLV +AA+KTND+AGDGTT    L + +  +G+K+
Sbjct:    2 AKDIKFSED--ARRSLLNGVNKLANTVKTTLGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHYENIGAKLVAEAASKTNDIAGDGTTTATVLTQAIVQEGMKN 105          
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: CH60_LACDA (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=groL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.466e-27
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  255 AKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVKS 572
            AKD+ F++D  A + L NGVNKLA  V  TLGPKGRNVVL   YGAP I NDGVT+AK +E ED  ENIGAKLV +AA+KTND+AGDGTT    L + +  +G+K+
Sbjct:    2 AKDIKFSED--ARRSLLNGVNKLANTVKTTLGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHYENIGAKLVAEAASKTNDIAGDGTTTATVLTQAIVQEGMKN 105          
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: CH60_CALS8 (60 kDa chaperonin OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=groL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.466e-27
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  252 AAKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVKS 572
            AAK + F+++  A + L  GVNKLA  V VTLGPKGRNVVL  K+G+P+IVNDGVT+AKE+E EDP EN+GA++VR+ A+KTND+AGDGTT    L + +  +G+K+
Sbjct:    2 AAKMILFDEE--ARRALERGVNKLADTVKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKN 106          
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: CH60_ANATD (60 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.466e-27
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  252 AAKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVKS 572
            AAK + F+++  A + L  GVNKLA  V VTLGPKGRNVVL  K+G+P+IVNDGVT+AKE+E EDP EN+GA++VR+ A+KTND+AGDGTT    L + +  +G+K+
Sbjct:    2 AAKMILFDEE--ARRALERGVNKLADTVKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKN 106          
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: CH60_CHLT3 (60 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.323e-27
Identity = 60/107 (56.07%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  252 AAKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVKS 572
            AAK++HF+ +G     L  GV+KLA  V VTLGP GRNV++  K+GAP +  DGVTVAKEVE EDPVEN+GA++VR+ A+KT+D+AGDGTT    L + +Y +G+K+
Sbjct:    2 AAKEIHFDAEG--RNALKRGVDKLADAVKVTLGPAGRNVIIDKKFGAPTVTKDGVTVAKEVELEDPVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKN 106          
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.590e-26
Identity = 60/107 (56.07%), Postives = 80/107 (74.77%), Query Frame = 3
Query:  252 AAKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVKS 572
            AAK+LHFN D  A  K   GV++LA  V VTLGPKGRNVV+  K+GAP +  DGVTVAKE+E  DP+EN+GA++V++ A KT+DLAGDGTT    L + ++ +G+K+
Sbjct:    2 AAKELHFNVDARAALK--RGVDQLAEAVKVTLGPKGRNVVIDKKFGAPTVTKDGVTVAKEIELADPIENMGAQMVKEVATKTSDLAGDGTTTATVLAQAIFREGLKN 106          
BLAST of EY720436 vs. ExPASy Swiss-Prot
Match: CH601_STRCO (60 kDa chaperonin 1 OS=Streptomyces coelicolor GN=groL1 PE=3 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.590e-26
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  255 AKDLHFNKDGYAMKKLHNGVNKLAYLVGVTLGPKGRNVVL*SKYGAPKIVNDGVTVAKEVESEDPVENIGAKLVRQAAAKTNDLAGDGTTHLLFLRKGLYLKGVKS 572
            AK L F++D  A + L  GVNKLA  V VT+GPKGRNVV+  K+GAP I NDGVT+A+EVE EDP EN+GA+LV++ A KTND+AGDGTT    L + L  +G+K+
Sbjct:    2 AKILKFDED--ARRALERGVNKLADTVKVTIGPKGRNVVIDKKFGAPTITNDGVTIAREVEVEDPYENLGAQLVKEVATKTNDIAGDGTTTATVLAQALVREGLKN 105          
The following BLAST results are available for this feature:
BLAST of EY720436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_BRANA1.132e-4864.50RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_ARATH4.301e-4863.91RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA2.700e-4279.31RuBisCO large subunit-binding protein subunit beta... [more]
CH60_LACDB5.466e-2760.3860 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_LACDA5.466e-2760.3860 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_CALS85.466e-2757.9460 kDa chaperonin OS=Caldicellulosiruptor saccharo... [more]
CH60_ANATD5.466e-2757.9460 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH60_CHLT39.323e-2756.0760 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH60_GEMAT1.590e-2656.0760 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH601_STRCO1.590e-2658.4960 kDa chaperonin 1 OS=Streptomyces coelicolor GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-E02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720436 ID=EY720436; Name=EY720436; organism=Citrus sinensis; type=EST; length=878bp
CCACGCGTCCGCCCACGCGTCCGCTAAAACTCTCGCACTTTCCGCCGTCT
CACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCAT
TAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCAT
CTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTC
GGCAGGAGACAGAGTGTATCTCTACGCAGGGCCCGCACACCTAAGATTTA
TGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAAC
TTCATAATGGTGTCAACAAGCTTGCATATCTAGTTGGAGTTACCCTTGGT
CCCAAGGGCAGGAATGTTGTTCTATAGAGCAAGTACGGTGCCCCAAAAAT
TGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTCAGAGGACCCGG
TTGAGAACATTGGTGCTAAATTAGTGAGACAGGCAGCTGCCAAGACTAAT
GACTTGGCTGGTGATGGAACAACACATCTGTTGTTCTTGCGCAAGGGCTT
ATACCTGAAGGGTGTAAAGTCNTGGCANCTGGTGCAAATCCTGTTCTTAT
CACAAGAGGGCTTGAAAAGACATCTCAGGCTCTTGTTTCTGAGCTCAAGC
AGATGTCAAAAGAGGTTGAAGATATTGAACTGCCCATGTAACCGCTGTTA
TTGCAGGGAAAACTATAAAGTGGGGATATTATTCCGAAACCATTAATATA
GGGGAAGTAAGGGTTGTGTAACCCTTGGAGAAGGAACAGTTGCTAAAAAT
TTCTCATTTTGTTGAGGGAAAGCAGTCATCCGCGCTTATTTCGCCCCCTC
TTCTTGGTGGTTGTGTAAAAGATGGGGT
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