EY720387

Overview
NameEY720387
Unique NameEY720387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY720387 vs. ExPASy Swiss-Prot
Match: IPO4_HUMAN (Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 2 
Query:    2 PRVRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQXXXXXXXXXXXXEDFEESMAVYNCISTLVLSSNPQILSLVPELVNL 346
            P VR NA F +G L ++GG  A +++  +L  L+PL    E  D VRDN  GA+AR++M +P   P  Q            ED EE + +    S L  SS  Q++ + PEL+ +
Sbjct:  913 PEVRSNAIFGMGVLAEHGGHPAQEHFPKLLGLLFPLLA-RERHDRVRDNICGALARLLMASPTRKPEPQVLAALLHALPLKEDLEEWVTIGRLFSFLYQSSPDQVIDVAPELLRI 1026
The following BLAST results are available for this feature:
BLAST of EY720387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IPO4_HUMAN2.381e-1135.65Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2[more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-008-G04-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720387 ID=EY720387; Name=EY720387; organism=Citrus sinensis; type=EST; length=861bp
CCCACGCGTCCGGAGGAATGCAGCATTTTGTGTTGGAGAGTTGTGCAAAA
ATGGGGGAGAGTCAGCTTTAAAATACTATGGTGATATTTTGCGGGGTCTT
TACCCATTATTTGGGGATTCTGAGCCTGATGATGCCGTCAGGGATAATGC
AGCTGGTGCTGTGGCAAGGATGATAATGGTCAACCCGCAGTCCATCCCGT
TGAATCAGGTCCTTCCTGTTCTTTTGAAAGTTCTTCCTCTTAAAGAAGAC
TTTGAAGAATCAATGGCTGTTTATAATTGTATTTCCACTCTGGTTTTGTC
TTCAAATCCCCAGATCCTTTCTCTTGTACCTGAGCTGGTTAACCTTTTTG
CTGAAGTAGTTGTTTCACCAGAGGAATCTTCTGAAGTGAAGTCTCAAGTT
GGCATGGCTTTTTCGCATCTAATATCTCTCTATGGCCAGCAAATGCAACC
GTTGTTGAGTAACCTCTCTCCTGCACATGCTACTGCCCTANCTGCATTTG
CCCCAAAAAGTTGATGTCCAATTGAGAAGGGTCGATGAATATAGCTTCTC
TTCCAAGTTTTTGACATGTTTTTCTANATTGAATTAGTATATGAAAGGAC
TGGTTTGATCACCATGATTTGATTGGGAANGGTGAAACCANAATGCGATC
AATAACAGGTTTTGGTCTTGCTCCAGGTGCACCTCTATTTTTCCCGTGTG
GAAACACTGGTTCGCCGCTAACTGATGTTAATTATAGGTTGGGGGTCCTC
TCAATATCCGGGGGCCTATTATGATTCCCCTTAGGGCCCCCAGGTTGGAT
TATTTATTTGGTGGGTGGGGGGGTAAATATAAAATTATGAAGGGTCGGCC
CCCACAAGGTT
back to top