EY720347

Overview
NameEY720347
Unique NameEY720347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720347 vs. ExPASy Swiss-Prot
Match: TYW23_ARATH (tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana GN=At4g04670 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.568e-43
Identity = 96/199 (48.24%), Postives = 126/199 (63.32%), Query Frame = 2
Query:   29 LGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLIMIGGGAACYAFGTKFSEPVKINLSSVPLMSLDDCNIPPEMGEKLVTHHYEGVTGEKNVNFQALELGNTQTLTESSDFNSEAKHPVXDGHQMAASHWVVELDKNYAKFGKDMLKKFGWLHLGRKPHQQEDGKRICCPVTEKFCAIFQEKQL 625
            +GGCPV QN QEL+LLDL+  +W+ ++L ++ KELFVRSTA+++ DDLI+IGGGAACYAFGTKFSEPVKINL  V  +++ + ++PP+          E V+ E N N       N    TE+S                 +  WV++L++ YAKFGKD+LK FGWL L RK +  E G  IC PVTE F  +F EKQL
Sbjct:  491 IGGCPVSQNCQELTLLDLKHRLWRSVRLEFMNKELFVRSTASILGDDLIVIGGGAACYAFGTKFSEPVKINL--VQSVTMSENHLPPQP---------EDVSLESNKN-------NADLKTETS----------------LSQPWVIQLERKYAKFGKDILKSFGWLDLERKVYSNEKGLCICFPVTENFSELFHEKQL 655          
BLAST of EY720347 vs. ExPASy Swiss-Prot
Match: TYW23_ORYSJ (tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica GN=Os07g0515000 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.855e-29
Identity = 75/204 (36.76%), Postives = 118/204 (57.84%), Query Frame = 2
Query:   20 LDSLGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLIMIGGGAACYAFGTKFSEPVKINLSSVPLMSLDDCNIPPEMGEKLVTHHYEGVTGEKNVNFQALELGNTQTLT--ESSDFNSEAKHPVXDGHQMAASHWVVELDKNYAKFGKDMLKKFGWLHLGRKPHQQEDGKRICCPVTEKFCAIFQEKQL 625
            L  LGGCP+R++ QE++LL+L+  IW ++ +  + + L VRS++ ++DDDL+++GGGA+CYAFGT+FS+P+KI+L                + E +    Y     EK ++ Q   + N   L   E +   S+    V D   + +S  V++L+K YAK  KD+LKKFGWL L RK    +D   +  PV++ F A+  +K L
Sbjct:  512 LGILGGCPIRESSQEIALLNLKHKIWFYVSIPSLSQCLCVRSSSVIIDDDLVIVGGGASCYAFGTRFSQPIKIDL---------------HLLESIFKLAY---NKEKEMSVQHGSVSNVDLLEGHEENCNPSDNVKVVIDTATLGSSPLVLQLEKKYAKLAKDILKKFGWLDLTRKVRVSQDNIHVLFPVSKTFHALITDKHL 697          
The following BLAST results are available for this feature:
BLAST of EY720347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TYW23_ARATH6.568e-4348.24tRNA wybutosine-synthesizing protein 2/3/4 OS=Arab... [more]
TYW23_ORYSJ1.855e-2936.76tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-008-C02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720347 ID=EY720347; Name=EY720347; organism=Citrus sinensis; type=EST; length=832bp
CCACGCGTCCGAAATTATCTTGGACTCTTTGGGGGGTTGTCCAGTTAGAC
AAAATTATCAAGAGTTGTCATTACTTGATCTCCAGCTCCATATCTGGAAA
CACTTGAAGCTCAATTATGTGTGCAAAGAATTATTTGTACGGTCTACAGC
CAACGTTGTTGACGATGATCTTATTATGATTGGTGGTGGTGCAGCTTGCT
ATGCTTTTGGAACAAAGTTCAGTGAGCCAGTGAAAATCAACTTGTCCTCT
GTACCACTTATGTCTTTAGATGACTGTAACATACCTCCTGAGATGGGAGA
AAAGCTTGTCACTCACCATTATGAAGGGGTAACAGGAGAAAAGAATGTTA
ACTTCCAAGCTTTAGAACTTGGGAACACACAGACTTTAACTGAAAGTTCT
GACTTCAATTCTGAGGCTAAACATCCTGTANATGATGGGCATCAGATGGC
TGCTTCACACTGGGTAGTGGAACTTGATAAAAACTATGCAAAGTTTGGGA
AGGACATGTTGAAGAAGTTTGGATGGTTACATCTTGGAAGGAAGCCTCAT
CAGCAGGAGGATGGAAAACGTATATGTTGTCCTGTGACTGAAAAATTTTG
TGCTATATTCCAAGAAAAGCAGCTTCATTCTGGGAGGTGAATCAGAAAGG
TTGAATACTATTGGATGTGTCCTAACCATAGTCGTGAGGGGGGTGTGGCG
CGAGGAACCGTCCCGTGGGCACGGGCTCTGGTCTCCTTAAGGGGATGGGG
GGCCCCCACCCCATCCGATGACCCCGTAGGACGCGGGGGGAGGCCACATC
CCCGACGCGAGACTAATCAATCTGGGCCGCTG
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