EY720338

Overview
NameEY720338
Unique NameEY720338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11212 contig Csv1_Contig11212:4..873. Citrus sinensis Unigene version 1.0 (Csv1)
Homology
BLAST of EY720338 vs. ExPASy Swiss-Prot
Match: ARK2_ARATH (Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis thaliana GN=ARK2 PE=1 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 2.468e-12
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 1
Query:  616 PQLKRFKL*KNNWNSDTYEFDEVFTESASQKR 711
            P+LKR KL KNNW+++TYEFDEV TE+ASQKR
Sbjct:   89 PELKRLKLRKNNWDTETYEFDEVLTEAASQKR 120          

HSP 2 Score: 35.4242 bits (80), Expect = 2.468e-12
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 3
Query:  486 P*NAEETVADVDFSDCVALQTEV 554
            P NA+E+VAD DF+DCV LQ E+
Sbjct:   69 PRNADESVADADFADCVELQPEL 91          
BLAST of EY720338 vs. ExPASy Swiss-Prot
Match: ARK3_ARATH (Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.533e-11
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  616 PQLKRFKL*KNNWNSDTYEFDEVFTESASQKR 711
            P+LKR KL KNNW++DT+EFDEV TE ASQKR
Sbjct:   99 PELKRLKLRKNNWDTDTFEFDEVLTEYASQKR 130          

HSP 2 Score: 33.8834 bits (76), Expect = 1.533e-11
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  486 P*NAEETVADVDFSDCVALQTEV 554
            P N EE +AD DF+DCV LQ E+
Sbjct:   79 PRNGEELIADADFADCVELQPEL 101          
BLAST of EY720338 vs. ExPASy Swiss-Prot
Match: ARK2_ORYSJ (Armadillo repeat-containing kinesin-like protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0137100 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.991e-11
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  616 PQLKRFKL*KNNWNSDTYEFDEVFTESASQKR 711
            P+LKR KL KNNW S+TYEFDEV TE ASQKR
Sbjct:   83 PELKRLKLRKNNWESETYEFDEVLTEFASQKR 114          

HSP 2 Score: 32.7278 bits (73), Expect = 1.991e-11
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  486 P*NAEETVADVDFSDCVALQTEV 554
            P NA+E  AD DF DCV LQ E+
Sbjct:   63 PRNADELAADADFGDCVELQPEL 85          
BLAST of EY720338 vs. ExPASy Swiss-Prot
Match: ARK1_ARATH (Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 4.336e-11
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 1
Query:  616 PQLKRFKL*KNNWNSDTYEFDEVFTESASQKR 711
            P++KR KL KNNWNS++Y+FDEVFT++ASQKR
Sbjct:  133 PEIKRLKLRKNNWNSESYKFDEVFTDTASQKR 164          

HSP 2 Score: 30.8018 bits (68), Expect = 4.336e-11
Identity = 16/45 (35.56%), Postives = 21/45 (46.67%), Query Frame = 3
Query:  420 SQAADFFXXXXXXXXXXXXXXXP*NAEETVADVDFSDCVALQTEV 554
            SQ+ DF                P N EE ++D DF+D V LQ E+
Sbjct:   91 SQSKDFDDDNDPGRVRVSVRVRPRNGEELISDADFADLVELQPEI 135          
The following BLAST results are available for this feature:
BLAST of EY720338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARK2_ARATH2.468e-1275.00Armadillo repeat-containing kinesin-like protein 2... [more]
ARK3_ARATH1.533e-1175.00Armadillo repeat-containing kinesin-like protein 3... [more]
ARK2_ORYSJ1.991e-1178.13Armadillo repeat-containing kinesin-like protein 2... [more]
ARK1_ARATH4.336e-1171.88Armadillo repeat-containing kinesin-like protein 1... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-008-B03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720338 ID=EY720338; Name=EY720338; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGCTCTCATAATAGAAACCCTAGAAAAAAAATCGATCAGAA
AAGCCACCATTCTGCCATTCAAAACTCCACCATTCTGCCACCGTCCAAAC
CATCATTCTCAATTGGGCACCCATTTCGCATTGTTTTTCAGTCTCTTTGT
CCTTTCGCCACAAGTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTG
CAAGCGAAGAAGTGATGGCTTCGACTGCATGTAGAAATGGTATTGTACGG
GAGGGAAATTCGAAATCATCATCTTTCAAATCTAGGCCTCATCCCTCTCC
CTCATTGGGATTGGCTGTTCGCCGCAGCATTTCCGCATCTTCTGTCGGAA
ATGACGGAGGCCAGTTTCATTTGTTCTTTTTTTTCTATTTGATTTTTGTC
TCAATAGTAACTTTTAATGTCCCAAGCTGCTGATTTTTTTGTGCTTGTAG
TGCCTGGAAGAGTTAGAGTGGCAGTGAGAGTGCGACCATGAAATGCAGAA
GAGACCGTAGCAGATGTCGATTTTTCTGATTGTGTCGCGCTGCAGACAGA
GGTGGTCTCATTCTCATTTTAATTGTTGAGTTTGTGTGTGATTGTTAAAA
TTGCACTTTGCTCTACCTCAGCTTAAGAGGTTTAAACTTTGAAAGAACAA
TTGGAACTCAGACACTTATGAATTCGATGAGGTTTTTACTGAATCTGCAT
CACAGAAGCGTGTTTGTGAAGTCGTTGCCAAGCCTGTNGTTGAGGTCTGT
TATGGTTGGTATAGTTGTCAATATTTAACACCATTTTTCAATCCAACAAT
TATGCTTCATTAGTTTTTTTGTGGACATTGCATAATCTTTTTAGCTTTCA
AATGGTACAATATCCTTTT
back to top