EY720325

Overview
NameEY720325
Unique NameEY720325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.815e-70
Identity = 147/237 (62.03%), Postives = 169/237 (71.31%), Query Frame = 1
Query:  124 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGILETDXIKGS*PLNDRVFIKVAEAEETTAGGLLLTEGSKEKPSLEWSLLLDPVLXMRKVXXNSIHCSREHGDVF-KYAGNDFXGSDG 828
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPSTAQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLIL+EDD+ GILET+ IK   PLNDRVFIKVAEAEE TAGGLLLTE +KEKPS+   + + P     +     +  S     ++ KYAGNDF G DG
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDG 237          

HSP 2 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  304 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAGTELE-FNGANHLILREDDVXGIL 576
            +KPL DRV +K+   EEKT GG+ L  T + KP  G V+AVG G    + K+  + V  G+ V+YSKYAG + +  +G+N++ LR  DV  IL
Sbjct:  160 LKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAIL 252          
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.798e-55
Identity = 123/240 (51.25%), Postives = 153/240 (63.75%), Query Frame = 1
Query:  124 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGILETDXIKGS*PLNDRVFIKVAEAEETTAGGLLLTEGSKEKPSLEWSLLLDP-VLXMRKVXXNSIHCSREHGDVFKYAGNDFXGSDG 828
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+ AQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G++HLI++EDD+ GILETD +K   PLNDR+ IKVAE E  T+GGLLL E SKEKPS    +   P VL           CS       KYAGNDF G DG
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDG 239          
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.079e-22
Identity = 48/94 (51.06%), Postives = 70/94 (74.47%), Query Frame = 1
Query:  304 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGILETD 585
            IKPL DRV++K +  EEKT+ G+++P TA+ KPQ G V+AVG G+    TK+++SVK G +V+Y KYAGTE+  +G  +LI+RE D+ GI+E +
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEE 99          
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  304 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGILE 579
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D+  I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  304 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGILE 579
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D+  I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  304 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGILE 579
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D+  I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.354e-22
Identity = 49/94 (52.13%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  301 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGILE 579
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD+  ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95          
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  301 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGILE 579
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD+  I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  301 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGILE 579
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD+  I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
BLAST of EY720325 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  301 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVXGIL 576
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  +LIL+E D+  ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93          
The following BLAST results are available for this feature:
BLAST of EY720325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
CH10C_ARATH1.815e-7062.0320 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL4.798e-5551.2520 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_RHOMR1.079e-2251.0610 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_THEPX1.409e-2254.3510 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP31.409e-2254.3510 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR1.409e-2254.3510 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_NATTJ5.354e-2252.1310 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_DESVV1.558e-2153.1910 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH10_DESVH1.558e-2153.1910 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_DESHY1.558e-2153.2610 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-H06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720325 ID=EY720325; Name=EY720325; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTAT
CAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTC
GCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCA
TCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACC
GTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTT
TCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACT
TCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGA
GGAGAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGC
CTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAG
ACTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAA
GTATGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGA
GGGAGGATGACGTANTTGGCATTCTTGAAACAGATGANATCAAGGGATCT
TAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGAC
AACTGCTGGAGGTTTGTTGTTGACGGAGGGCAGCAAGGAGAAACCTTCAT
TGGAATGGTCATTGCTGTTGGACCCGGTCCTCTANATGAGGAAGGTANTA
NGAAACTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCAAGTATGC
AGGGAATGACTTCANGGGCAGTGATGGTACAACTACCTTGCTTTAAGAGC
TTCTGAAGTGATGGCTGTGCTCTCTTAGTNGTCT
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