EY720316

Overview
NameEY720316
Unique NameEY720316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720316_ssr710 microsatellite EY720316_ssr710:710..721. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9154 contig Csv1_Contig9154:403..1198. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 4.519e-91
Identity = 125/136 (91.91%), Postives = 134/136 (98.53%), Query Frame = 1
Query:  139 PAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 546
            PAIDVC+GLLGDKA LSIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPTTVK+VSVVWDAYEATKDAHG+CILTEWDEFKTLDYQ+I+DNMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct:  345 PAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480          

HSP 2 Score: 84.7297 bits (208), Expect = 4.519e-91
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETQPLMSARG 163
            +DYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRET  +   +G
Sbjct:  303 NDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQG 352          
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.313e-87
Identity = 118/134 (88.06%), Postives = 130/134 (97.01%), Query Frame = 1
Query:  139 PAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPA 540
            PAIDVCKGLLGDKA++SIYDPQVTE+QIQRDL+M KFDWDHPLHLQPMSPTTVKQVSV WDAYEATKDAH VC+LTEWDEFK+LDYQ+I+DNMQKPAF+FDGRN+++ NKLREIGFIVYSIGKPLDPWLKDMPA
Sbjct:  345 PAIDVCKGLLGDKAQISIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478          

HSP 2 Score: 82.0333 bits (201), Expect = 1.313e-87
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETQPLMSARG 163
            +DYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRET  +   +G
Sbjct:  303 NDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKG 352          
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.698e-69
Identity = 120/136 (88.24%), Postives = 130/136 (95.59%), Query Frame = 1
Query:  139 PAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 546
            PAIDVCKGLL DKARLSIYDPQVTEDQIQRDL+MNKFDWDHPLHLQPMSPTTVKQV+V WDAYEATKDAHG+CI+TEWDEFK LD+Q+I+DNMQKPAFVFDGRN+++  KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct:  345 PAIDVCKGLLEDKARLSIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMTEWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480          

HSP 2 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETQPLMSARGFWETK 178
            +DYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRET  +   +G  E K
Sbjct:  303 NDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDK 357          
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.614e-35
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 1
Query:  142 AIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQ-VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 507
            AI VC+ LL + A L IYDP+V  +QI  DLT       HP   +  SP  VK+ V +  D Y A +  H + I TEWDEF  LD++RIY +M KPA++FDGR ++D  +L++IGF V +IGK
Sbjct:  346 AITVCQTLLEEGAALDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459          

HSP 2 Score: 65.855 bits (159), Expect = 2.614e-35
Identity = 28/42 (66.67%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRET 139
            ++YQK RF  +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET
Sbjct:  303 NEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRET 344          
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.156e-33
Identity = 59/147 (40.14%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  142 AIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD--ANKLREIGFIVYSIGKPLDPWLKDMPAVA*KRRQWACSC 576
            +I + K L+ + A+L IYDP+V ++QI  DL+      D+ +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK           V+ KR  +A SC
Sbjct:  350 SIYISKYLMDEGAKLHIYDPKVPKEQIILDLSHPGVSEDNQVS---------RLVTISQDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK----------KVSAKRIPFASSC 477          

HSP 2 Score: 68.9366 bits (167), Expect = 5.156e-33
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETQPL 148
            +DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+  +
Sbjct:  307 NDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351          
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.715e-33
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  142 AIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 507
            +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  350 SIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          

HSP 2 Score: 68.9366 bits (167), Expect = 6.715e-33
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETQPL 148
            +DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+  +
Sbjct:  307 NDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351          
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.745e-33
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  142 AIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 507
            +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  350 SIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          

HSP 2 Score: 68.9366 bits (167), Expect = 8.745e-33
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETQPL 148
            +DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+  +
Sbjct:  307 NDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351          
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.745e-33
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  142 AIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 507
            +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  350 SIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          

HSP 2 Score: 68.9366 bits (167), Expect = 8.745e-33
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETQPL 148
            +DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+  +
Sbjct:  307 NDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351          
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.932e-32
Identity = 53/124 (42.74%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  142 AIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 507
            +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  350 SIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          

HSP 2 Score: 68.9366 bits (167), Expect = 1.932e-32
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETQPL 148
            +DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+  +
Sbjct:  307 NDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351          
BLAST of EY720316 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.235e-32
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  142 AIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 507
            +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   ++L+ IGF + +IGK
Sbjct:  350 SIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464          

HSP 2 Score: 68.9366 bits (167), Expect = 7.235e-32
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   14 DDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETQPL 148
            +DYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+  +
Sbjct:  307 NDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351          
The following BLAST results are available for this feature:
BLAST of EY720316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
UGDH_SOYBN4.519e-9191.91UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH2_ARATH1.313e-8788.06Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH1_ARATH1.698e-6988.24Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH_DROME2.614e-3547.15UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CHICK5.156e-3340.14UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_BOVIN6.715e-3343.55UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_PONAB8.745e-3343.55UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN8.745e-3343.55UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_RAT1.932e-3242.74UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_MOUSE7.235e-3241.94UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-G07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720316 ID=EY720316; Name=EY720316; organism=Citrus sinensis; type=EST; length=796bp
CACCCACGCGTCCGATGATTACCAGAAAAGCCGTTTTGTGAACCGCGTAG
TTGCCTCTATGTTCAACACGGTTTCAAACAAGAAGATTGCCGTTCTGGGA
TTTGCCTTCAAGAAGGATACAGGTGACACCAGAGAGACCCAGCCATTGAT
GTCTGCAAGGGGCTTTTGGGAGACAAAGCTCGGTTGAGTATATACGACCC
ACAGGTCACCGAGGACCAGATCCAGAGGGACCTTACAATGAACAAGTTTG
ACTGGGACCATCCTCTTCACCTCCAGCCAATGAGTCCCACCACGGTGAAG
CAAGTGAGCGTGGTCTGGGATGCCTATGAAGCAACAAAAGATGCCCATGG
TGTCTGCATCTTGACCGAGTGGGATGAGTTCAAGACTCTTGACTATCAGA
GGATATATGACAACATGCAGAAACCAGCATTCGTGTTTGATGGCAGGAAT
GTTGTTGATGCCAACAAGTTGAGGGAGATTGGTTTCATCGTGTACTCCAT
TGGTAAGCCACTCGATCCATGGTTGAAGGACATGCCGGCTGTTGCATAAA
AGAGACGCCAATGGGCATGCTCGTGTCATCGGGCATCAGATTATAGATGA
TGAAGAAGTCAGCTCAATTCTTTACTATATTTTGATGAGTTTTTGTTGTG
CCTTTGCTTTTGCTANGAGGCTCTATGTTTTTGCCTTATCACTTTATTTG
ATGATACTACTGTCTGTCTGTTACTTGTNTGTTAAAAGACTCTATTGATT
TTTATTTGATTTAATCCGTTACGACCCAAAAAAAAAAAAAAAAAAG
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