EY720308

Overview
NameEY720308
Unique NameEY720308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11177 contig Csv1_Contig11177:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMP_PEA (Phosphoglucomutase, chloroplastic OS=Pisum sativum GN=PGMP PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.146e-77
Identity = 141/157 (89.81%), Postives = 150/157 (95.54%), Query Frame = 2
Query:   50 KPREKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            KP EKL+SVSDVVK HWATYGRNFFSRYDYEECESEGANKMI YLR+L+SKSK GDKYG+YVLQFADDF YTDPVDGSV SKQGVRFVFTDGSRII+RLSGTGSAGATVR+YIEQFEPDVSKH++DAQ ALKPLIDLALSVSKL+DFTGREKPTVIT
Sbjct:  470 KPGEKLVSVSDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRELLSKSKPGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 626          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMP_ARATH (Phosphoglucomutase, chloroplastic OS=Arabidopsis thaliana GN=PGMP PE=1 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.955e-77
Identity = 141/157 (89.81%), Postives = 152/157 (96.82%), Query Frame = 2
Query:   50 KPREKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            KP +KL+SV+DVVK +WATYGRNFFSRYDYEECESEGANKMI YLR+++SKSKAGD YGNYVLQFADDF+YTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKH++DAQ ALKPLIDLALSVSKL+DFTGREKPTVIT
Sbjct:  467 KPGDKLVSVADVVKEYWATYGRNFFSRYDYEECESEGANKMIEYLREILSKSKAGDVYGNYVLQFADDFSYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 623          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMP_SOLTU (Phosphoglucomutase, chloroplastic OS=Solanum tuberosum GN=PGMP PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.335e-77
Identity = 142/158 (89.87%), Postives = 150/158 (94.94%), Query Frame = 2
Query:   47 EKPREKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            +K  EKL+SV+DVVK HWATYGRNFFSRYDYEECESEGAN MI YLRDL+SKSKAGDKYG+Y L FADDFAYTDPVDGSVASKQGVRFVF+DGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKH+MDAQ ALKPLIDLALSVSKL+DFTGREKPTVIT
Sbjct:  475 KKSGEKLVSVADVVKDHWATYGRNFFSRYDYEECESEGANNMIEYLRDLISKSKAGDKYGSYSLDFADDFAYTDPVDGSVASKQGVRFVFSDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHDMDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 632          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMP_BRANA (Phosphoglucomutase, chloroplastic OS=Brassica napus GN=PGMP PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.121e-75
Identity = 136/158 (86.08%), Postives = 150/158 (94.94%), Query Frame = 2
Query:   47 EKPREKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            +KP EKL+SV+DVV  +WATYGRNFFSRYDYEECESEGANKMI YLRD+V+KSKAG+ YGNYVLQFADDF+Y DPVDGSVASKQGVRFVFTDGSRII+RLSG GSAGATVRIYIEQFEPDVSKH++DAQ A+KPLIDLALSVSKL++FTGREKPTVIT
Sbjct:  472 KKPGEKLVSVADVVNEYWATYGRNFFSRYDYEECESEGANKMIEYLRDIVAKSKAGENYGNYVLQFADDFSYKDPVDGSVASKQGVRFVFTDGSRIIYRLSGNGSAGATVRIYIEQFEPDVSKHDVDAQIAIKPLIDLALSVSKLKEFTGREKPTVIT 629          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGM1_MACFA (Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM1 PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 6.348e-44
Identity = 89/155 (57.42%), Postives = 115/155 (74.19%), Query Frame = 2
Query:   71 SVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            SV D++K HW  YGRNFF+RYDYEE E+EGANKM+  L  L+  +S  G ++      Y ++ AD+F Y+DPVDGS++  QG+R +FTDGSRIIFRLSGTGSAGAT+R+YI+ +E DV+K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  408 SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRSAPTVIT 562          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMC_MESCR (Phosphoglucomutase, cytoplasmic OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.083e-43
Identity = 86/160 (53.75%), Postives = 119/160 (74.38%), Query Frame = 2
Query:   59 EKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDL------VSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            EKL++V D+V  HWATYGR++++RYDYE  ++ GA +++ YL +L      V+    G   G   +  AD+F Y DPVDGSV+  QG+R++F DGSR+IFRLSGTGS GAT+R+YIEQ+E D SK   D+Q ALKPL+D+AL +SK+++F+GR +PTVIT
Sbjct:  424 EKLVTVEDIVCQHWATYGRHYYTRYDYENVDAGGAKELMAYLVNLQSDLSKVNNIVKGVHSGVANVIAADEFEYKDPVDGSVSKHQGIRYMFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDSSKTGRDSQEALKPLVDVALKLSKMQEFSGRSEPTVIT 583          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGM1_HUMAN (Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 1.083e-43
Identity = 88/155 (56.77%), Postives = 115/155 (74.19%), Query Frame = 2
Query:   71 SVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            SV D++K HW  YGRNFF+RYDYEE E+EGANKM+  L  L+  +S  G ++      Y ++ AD+F Y+DPVDGS++  QG+R +FTDGSRI+FRLSGTGSAGAT+R+YI+ +E DV+K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  408 SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIVFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGM1_MOUSE (Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 7.019e-43
Identity = 87/155 (56.13%), Postives = 114/155 (73.55%), Query Frame = 2
Query:   71 SVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            SV D++K HW  +GRNFF+RYDYEE E+EGANKM+  L  L+  +S  G ++      Y ++ AD+F Y+DPVDGS++  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E DV+K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  408 SVEDILKDHWQKFGRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGM1_BOVIN (Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.197e-42
Identity = 88/157 (56.05%), Postives = 112/157 (71.34%), Query Frame = 2
Query:   71 SVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSK-------AGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            SV D++K HW  YGRNFF+RYDYEE E+EGANKM+  L  L+S           GDK   Y ++  D+F Y+DPVDGS++  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D++K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  408 SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKV--YTVEKIDNFEYSDPVDGSISRNQGLRLLFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIALKVSQLQEKTGRTAPTVIT 562          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMC2_ARATH (Probable phosphoglucomutase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At1g70730 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.483e-42
Identity = 82/159 (51.57%), Postives = 115/159 (72.33%), Query Frame = 2
Query:   62 KLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYV------LQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            KL++V D+V+ HWATYGR++++RYDYE  ++  A +++G L  L S     +K    +      +  AD+F Y DPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL +SK+++FTGR  PTVIT
Sbjct:  427 KLVTVEDIVRQHWATYGRHYYTRYDYENVDATAAKELMGLLVKLQSSLPEVNKIIKGIHPEVANVASADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKIGRDSQDALGPLVDVALKLSKMQEFTGRSSPTVIT 585          
The following BLAST results are available for this feature:
BLAST of EY720308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGMP_PEA1.146e-7789.81Phosphoglucomutase, chloroplastic OS=Pisum sativum... [more]
PGMP_ARATH1.955e-7789.81Phosphoglucomutase, chloroplastic OS=Arabidopsis t... [more]
PGMP_SOLTU3.335e-7789.87Phosphoglucomutase, chloroplastic OS=Solanum tuber... [more]
PGMP_BRANA3.121e-7586.08Phosphoglucomutase, chloroplastic OS=Brassica napu... [more]
PGM1_MACFA6.348e-4457.42Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM... [more]
PGMC_MESCR1.083e-4353.75Phosphoglucomutase, cytoplasmic OS=Mesembryanthemu... [more]
PGM1_HUMAN1.083e-4356.77Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 ... [more]
PGM1_MOUSE7.019e-4356.13Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 ... [more]
PGM1_BOVIN1.197e-4256.05Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV... [more]
PGMC2_ARATH3.483e-4251.57Probable phosphoglucomutase, cytoplasmic 2 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-F11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720308 ID=EY720308; Name=EY720308; organism=Citrus sinensis; type=EST; length=739bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGA
AACCCAGGGAAAAGTTGATATCTGTCTCTGATGTTGTAAAAGCACATTGG
GCAACATATGGCAGAAACTTCTTTTCGAGATACGACTATGAAGAATGTGA
ATCTGAAGGAGCAAATAAAATGATAGGATATCTTAGAGATTTGGTATCTA
AGAGCAAAGCAGGCGATAAGTATGGAAATTATGTTCTTCAATTTGCAGAT
GACTTTGCATACACTGATCCAGTTGACGGAAGTGTGGCATCAAAGCAAGG
TGTTCGGTTTGTTTTCACAGACGGATCAAGGATAATATTTCGTTTATCAG
GAACTGGTTCAGCAGGTGCAACTGTTCGAATTTACATTGAACAGTTTGAG
CCAGATGTCTCTAAACATGAAATGGATGCACAATCAGCCTTGAAACCGTT
AATAGATCTGGCATTATCTGTTTCAAAGTTGAGGGACTTCACTGGAAGGG
AGAAACCTACAGTTATCACATAAAGAGCTCTCCCGTTATTAGTCTCTATG
TATCAGGTGTTATTTTAAGTTGGAGCTGAGAGATGGGCATACCAACTTTT
CATGCTGGAGTTGAGTTATCATAAATATCTCCTGTCCAGGTTTGGTTAGG
AAATCTGGGATCATGGGACCATCAATAAGTCCATGGAATGCCAATCAAGT
CCATCGGTCGAAATCAGAAAAAAAAAAAAAAAAAAAAAA
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