EY720285

Overview
NameEY720285
Unique NameEY720285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 9.143e-95
Identity = 162/203 (79.80%), Postives = 179/203 (88.18%), Query Frame = 2
Query:  116 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGPGSCCF 724
            M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+MGEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS+GQI VPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVL+PY +EDARGLLKAAIR P    F
Sbjct:    1 MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVF 202          

HSP 2 Score: 47.7506 bits (112), Expect = 9.143e-95
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  708 PDPVVFLENES*YGESSPVSPESLDSTCGFPLG 806
            PDPVVFLENE  YGES P+S E+LDS+   P+G
Sbjct:  197 PDPVVFLENELLYGESFPISEEALDSSFCLPIG 229          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 9.068e-83
Identity = 167/236 (70.76%), Postives = 180/236 (76.27%), Query Frame = 2
Query:  116 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGPGSCCFS*K*VVIW*VIPGIT*KS*FHLWLPVGKLTWER 823
            M G+IR K           IRP  S  R +SSA KQM VR+ALNSALD EMSAD KVFLMGEEVGEYQGAYK++KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS+GQI+VPIVFRG NG AAGVGAQHS CYA+WY S PGLKVL P+ +EDARGLLKAAIR P    F    ++     P          WLP+GK   ER
Sbjct:    1 MLGVIRNKT----------IRPSFSAFRFFSSA-KQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIER 225          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.710e-69
Identity = 119/168 (70.83%), Postives = 143/168 (85.12%), Query Frame = 2
Query:  206 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGP 709
            S+ VK+M VR+ALNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTPITE GFTG+  GAA+ GL+P+ EFMTFNFSMQAIDHI+NSAA++ YMS G  A PIVFRGPNG AA V AQHSQ +A WY S+PGLKV+SPY +EDARGLLKAAIR P
Sbjct:   32 SNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDP 199          

HSP 2 Score: 35.039 bits (79), Expect = 1.710e-69
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 3
Query:  708 PDPVVFLENES*YGESSPVSPESLDSTCGFPLG 806
            P+PVV LENE  YG++ P+S E+L      P G
Sbjct:  199 PNPVVVLENEILYGKTFPISKEALSEDFVLPFG 231          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 8.412e-69
Identity = 120/189 (63.49%), Postives = 146/189 (77.25%), Query Frame = 2
Query:  158 SPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGPGSCCF 724
            +P + +RP  +      S+ K M VREALNSA+ EE+  D  VFL+GEEV +Y GAYK+SKGLL+++G  RV+DTPITE GFTG+ VGAA  GLKP+VEFM+FNFSMQAIDH++NSAAK++YMS G     +VFRGPNGAA GVGAQHSQ ++ WY S+PGLKVL PY +EDARGLLKAAIR P    F
Sbjct:   17 APTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVF 205          

HSP 2 Score: 36.965 bits (84), Expect = 8.412e-69
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  708 PDPVVFLENES*YGESSPVSPESLDSTCGFPLGS*HGREG 827
            P+PVVFLENE  YGES  +S E+L      P  +   REG
Sbjct:  200 PNPVVFLENELLYGESFEISEEALSPEFTLPYKAKIEREG 239          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 1.001e-66
Identity = 118/171 (69.01%), Postives = 139/171 (81.29%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGPGSCCF 724
            A   M VR+ALN A+DEE+  D +VFLMGEEV +Y GAYKISKGL +K+G +RV+DTPITE GF GI VGAA+ GL+P+ EFMTFNFSMQAID IINSAAK+ YMS+G++ VPIVFRGPNGAAAGV AQHSQ ++AWYA  PGLKV+ PY +EDA+GLLKAAIR      F
Sbjct:   21 AASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVF 191          

HSP 2 Score: 34.6538 bits (78), Expect = 1.001e-66
Identity = 17/32 (53.12%), Postives = 20/32 (62.50%), Query Frame = 3
Query:  711 DPVVFLENES*YGESSPVSPESLDSTCGFPLG 806
            +PVVFLENE  YG+S PV  E L      P+G
Sbjct:  187 NPVVFLENEILYGQSFPVGDEVLSDDFVVPIG 218          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.431e-64
Identity = 115/167 (68.86%), Postives = 137/167 (82.04%), Query Frame = 2
Query:  224 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGPGSCCF 724
            M VREAL  A+ EEM A+  VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPITE GF G+GVGAA  GL+P+VEFMTFNF+MQAID IINSAAK+ YMS GQ+  PIVFRGP+GAAA V AQHSQCYAAWY+ +PGLKV+ PY + DA+GLLKAAIR P    F
Sbjct:  138 MTVREALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAPIVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIF 304          

HSP 2 Score: 28.4906 bits (62), Expect = 3.431e-64
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  708 PDPVVFLENES*YGESSPV 764
            P+PV+FLENE  YG+S  V
Sbjct:  299 PNPVIFLENEILYGQSFEV 317          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.296e-63
Identity = 112/164 (68.29%), Postives = 141/164 (85.98%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            A K++ VR+A+NSALDEE++ D KVF+MGEEV +Y GAYKI+KGL +KYG +R++DTPITEAGF GIGVGAA  G +P++EFMTFNF+MQAIDHIINS+AK++YMS G++  PIV+RGPNG    VGAQHSQC+AAWY SVPGLKV++P+ + D RGLLK+AIR
Sbjct:   25 ATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIR 188          

HSP 2 Score: 22.7126 bits (47), Expect = 1.296e-63
Identity = 11/32 (34.38%), Postives = 17/32 (53.12%), Query Frame = 3
Query:  711 DPVVFLENES*YGESSPVSPESLDSTCGFPLG 806
            +PVV+LE+E  Y     +S +  D     P+G
Sbjct:  191 NPVVYLESELLYNYKFDLSDQEQDKEYLVPIG 222          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 4.082e-62
Identity = 111/164 (67.68%), Postives = 136/164 (82.93%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS+G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP+ SEDA+GL+K+AIR
Sbjct:   29 AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIR 192          

HSP 2 Score: 23.8682 bits (50), Expect = 4.082e-62
Identity = 12/32 (37.50%), Postives = 17/32 (53.12%), Query Frame = 3
Query:  711 DPVVFLENES*YGESSPVSPESLDSTCGFPLG 806
            +PVV LENE  YG +  +  E+       P+G
Sbjct:  195 NPVVMLENELMYGVAFELPTEAQSKDFLIPIG 226          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 4.082e-62
Identity = 111/164 (67.68%), Postives = 136/164 (82.93%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS+G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP+ SEDA+GL+K+AIR
Sbjct:   29 AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIR 192          

HSP 2 Score: 23.8682 bits (50), Expect = 4.082e-62
Identity = 12/32 (37.50%), Postives = 17/32 (53.12%), Query Frame = 3
Query:  711 DPVVFLENES*YGESSPVSPESLDSTCGFPLG 806
            +PVV LENE  YG +  +  E+       P+G
Sbjct:  195 NPVVMLENELMYGVAFELPAEAQSKDFLIPIG 226          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 6.940e-62
Identity = 110/164 (67.07%), Postives = 135/164 (82.32%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            A  Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP+ SEDA+GL+K+AIR
Sbjct:   29 AALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIR 192          

HSP 2 Score: 25.0238 bits (53), Expect = 6.940e-62
Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 3
Query:  711 DPVVFLENES*YGESSPVSPESLDSTCGFPLG 806
            +PVV LENE  YG      PE+       P+G
Sbjct:  195 NPVVVLENELMYGVPFEFPPEAQSKDFLIPIG 226          
The following BLAST results are available for this feature:
BLAST of EY720285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_ARATH9.143e-9579.80Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA9.068e-8370.76Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO1.710e-6970.83Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST8.412e-6963.49Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL1.001e-6669.01Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME3.431e-6468.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_DICDI1.296e-6368.29Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT4.082e-6267.68Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE4.082e-6267.68Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PONAB6.940e-6267.07Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-D09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720285 ID=EY720285; Name=EY720285; organism=Citrus sinensis; type=EST; length=871bp
CACCACGCGTCCGTAGAATTTCGTGCTCTTCGTGTGGGCTGTGCGTTGCA
ACTTTCAACCTATTTCCCTCTCCACGGCGATCGGATCGCTGATAACTTTC
ACTTCTGAGTTGAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGG
AGGAGGTTCTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAA
ACTACTCATCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCT
GCTCTTGATGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGA
AGAGGTTGGGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGG
AGAAATATGGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGT
TTTACTGGGATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGT
GGAATTCATGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTA
ATTCTGCTGCAAAATCAAATTACATGTCTTCTGGCCAAATAGCGGTTCCT
ATCGTCTTCAGAGGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACA
CTCTCAATGTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTAC
TGAGCCCATACCGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATA
AGGGGTCCCGGATCCTGTTGTTTTTCTTGAAAATGAGTCGTAATATGGTG
AGTCATCCCCGGTATCACCTGAAAGTCTTGATTCCACTTGTGGCTTCCCG
TTGGGAAGCTAACATGGGAGAGAAGGAAGATGTACTATCACGCTTCCCCC
AAATGGGGGCTTCATCCACGC
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