EY720277

Overview
NameEY720277
Unique NameEY720277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:144..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 3.614e-111
Identity = 191/231 (82.68%), Postives = 216/231 (93.51%), Query Frame = 2
Query:  101 MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            MRGGSLWQLGQSITRRLA++DKK ++RR+FAS+A+ LKKTAL+DFHVA+GGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDV+HMCGLSLKGKDCVPFLE LV+ADVAGLAPGTG+LTVFTNE GG+IDDSVITKV D+HIYLVVNAGC+DKDLAHI+ HMK+F ++GGDVSWHIHDERSLLALQGPLAAPVLQHLTK+DLSKLY G F I DI G +C LT+TGY G
Sbjct:    1 MRGGSLWQLGQSITRRLAQSDKKVVSRRYFASEAD-LKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVAHMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDEHIYLVVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKLYFGNFQILDINGSTCFLTRTGYTG 230          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 1.163e-109
Identity = 193/231 (83.55%), Postives = 212/231 (91.77%), Query Frame = 2
Query:  101 MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            MRGG LWQLGQSITRRLA+ADKKTI RR FASDA+ LKKT L+DFHV NGGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDVSHMCGLSLKGKD +PFLEKLVIADVAGLAPGTG+LTVFTNE GG+IDDSV+TKV +DHIYLVVNAGC+DKDLAHI+ HMKSF ++GGDVSWHIHDERSLLALQGPLAAPVLQ+LTKDDLSK+Y GEF + DI G  C LT+TGY G
Sbjct:    1 MRGG-LWQLGQSITRRLAQADKKTIGRRCFASDAD-LKKTVLYDFHVVNGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVSHMCGLSLKGKDTIPFLEKLVIADVAGLAPGTGSLTVFTNEKGGAIDDSVVTKVTNDHIYLVVNAGCRDKDLAHIEEHMKSFKSKGGDVSWHIHDERSLLALQGPLAAPVLQYLTKDDLSKMYFGEFRVLDINGAPCFLTRTGYTG 229          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.983e-109
Identity = 187/231 (80.95%), Postives = 211/231 (91.34%), Query Frame = 2
Query:  101 MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            MRGG LWQLGQS+TRRLA+A+KK IARR FAS+A+ LKKTAL+DFHVANGGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDV+HMCGLSLKGKDC+PFLEKLV+ D+AGLAPGTGTL+V TNE GG+IDD+VITKV DDHIYLVVNAGC++KDLAHI+ HMK+F A+GGDVSWHIHDERSLLALQGPLAAPVLQHLTK+DLSK Y G+F   DI G  C LT+TGY G
Sbjct:    1 MRGGGLWQLGQSVTRRLAQAEKKVIARRCFASEAD-LKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVAHMCGLSLKGKDCIPFLEKLVVGDIAGLAPGTGTLSVLTNEKGGAIDDTVITKVTDDHIYLVVNAGCREKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKFYFGQFTFLDINGFPCYLTRTGYTG 230          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 4.885e-108
Identity = 190/231 (82.25%), Postives = 209/231 (90.48%), Query Frame = 2
Query:  101 MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            MRGG LWQ+GQSITRRL ++DKKTI RR +AS+A+ LKKT L+DFHVANGGKMVPFAGWSMPIQYKDSIMEST+NCR+NGSLFDVSHMCGLSLKGKDCV FLEKLV+ADVAGLAPGTG+LTVFTNE GG+IDDSVITKV DDHIYLVVNAGC+DKDLAHI+ HMK+F A+GGDVSWHIHDERSLLALQGPLA   LQHLTKDDLSK+Y G+F I DI G  C LT+TGY G
Sbjct:    1 MRGG-LWQVGQSITRRLGQSDKKTIVRRWYASEAD-LKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSHMCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEQHMKAFKAKGGDVSWHIHDERSLLALQGPLAGSTLQHLTKDDLSKMYFGDFRIIDISGSKCFLTRTGYTG 229          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 6.380e-108
Identity = 190/231 (82.25%), Postives = 210/231 (90.91%), Query Frame = 2
Query:  101 MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            MRGG LWQLGQSITRRL ++DKKTIARR +AS+A+ LKKT L+DFHVANGGKMVPFAGWSMPIQYKDSIMEST+NCR+NGSLFDVSHMCGLSLKGKDCVPFLEKLV+ADVAGL PGTG+LTVFTNE GG+IDDSVITKV DDHIYLVVNAGC+DKDLAHI+ HMK+F A+GGDVSWHI+DERSLLALQGPLA   LQHLTK+DLSK+Y G+F I DI G  C LT+TGY G
Sbjct:    1 MRGG-LWQLGQSITRRLGQSDKKTIARRCYASEAD-LKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSHMCGLSLKGKDCVPFLEKLVVADVAGLRPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYDERSLLALQGPLAGSTLQHLTKEDLSKMYFGDFRIIDINGSKCFLTRTGYTG 229          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.501e-106
Identity = 187/231 (80.95%), Postives = 209/231 (90.48%), Query Frame = 2
Query:  101 MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            MRGG LWQLGQSITRRL ++DKKTI RR +AS+A+ LKKT L+DFHVA+GGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDVSHMCGLSLKGKDCV FLEKLV+ADVAGLAPGTG+LTVFTNE GG+IDDSVITKV DDHIYLVVNAGC+DKDLAHI+ HMK+F A+GGDVSWHI+DERSLLALQGPLA   LQHLTK+DLSK+Y G+F I DI G  C LT+TGY G
Sbjct:    1 MRGG-LWQLGQSITRRLGQSDKKTIVRRCYASEAD-LKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVSHMCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYDERSLLALQGPLAGSTLQHLTKEDLSKMYFGDFRIIDINGSKCFLTRTGYTG 229          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 384.03 bits (985), Expect = 5.971e-106
Identity = 192/232 (82.76%), Postives = 208/232 (89.66%), Query Frame = 2
Query:  101 MRGGSLWQLGQSITRRLARA-DKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            MRGG LWQLGQSITRRLA   DKK +ARR FA+++E LKKT L+DFHVA+GGKMVPFAGWSMPIQYKDSIM+STLNCRQNGSLFDVSHMCGLSLKGKD V FLEKLVIADVA LA GTGTLTVFTNE GG+IDDSVITKV DDH+YLVVNAGC+DKDLAHI+ HMK+F A+GGDVSWHIHDERSLLALQGPLAAPVLQHLTK+DLSKLY GEF + DI G  C LT+TGY G
Sbjct:    1 MRGG-LWQLGQSITRRLANGGDKKAVARRCFATESE-LKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLKGKDVVSFLEKLVIADVAALAHGTGTLTVFTNEKGGAIDDSVITKVTDDHLYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKLYFGEFRVLDINGSQCFLTRTGYTG 230          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_HUMAN (Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-46
Identity = 98/198 (49.49%), Postives = 132/198 (66.67%), Query Frame = 2
Query:  203 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVS-CLLTKTGYLG 793
            E L++T L+DFH+A+GGKMV FAGWS+P+QY+DS  +S L+ RQ+ SLFDVSHM    + G D V  +E LV+ D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGC +KDLA +   ++    QG DV   + D  +LLALQGP AA VLQ    DDL KL      + ++ GVS C +T+ GY G
Sbjct:   31 EVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLD-NALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTG 227          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_MOUSE (Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.387e-46
Identity = 97/208 (46.63%), Postives = 138/208 (66.35%), Query Frame = 2
Query:  173 IARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVS-CLLTKTGYLG 793
            +  R  +S  + L++T L+DFH+A+GGKMV FAGWS+P+QY+DS ++S L+ R++ SLFDVSHM    + G D V  LE +V+ D+A L P  GTL++FTNE GG +DD +++   + H+Y+V NAGC+DKDLA +   +K F  +G DV   +  E +LLALQGP A  VLQ    DD+ KL      + ++ GVS C +T+ GY G
Sbjct:   21 VQSRPLSSVQDVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKIFGCDRVKLLESVVVGDIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHLYVVSNAGCRDKDLALMQDKVKEFQNRGLDVGLEV-VENALLALQGPTATQVLQAGVTDDMKKLPFMTSAVMEVFGVSGCRVTRCGYTG 227          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.069e-46
Identity = 95/196 (48.47%), Postives = 131/196 (66.84%), Query Frame = 2
Query:  209 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVS-CLLTKTGYLG 793
            L +T L+DFH+A+GGKMV FAGWS+P+QY+DS + S L+ RQ+ SLFDVSHM    + G D V  +E LV+ D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGC++KDL  +   ++    +G DV+  + D  +LLALQGP AA VLQ    DDL KL      + ++ GVS C +T+ GY G
Sbjct:   27 LHRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVNSHLHTRQHCSLFDVSHMLQTKIFGCDRVKLMESLVVGDIAELKPNQGTLSLFTNEAGGILDDLIVTSASEGHLYVVSNAGCREKDLTLMQDKVRELQNKGSDVALEVMD-NALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTG 221          
The following BLAST results are available for this feature:
BLAST of EY720277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_ARATH3.614e-11182.68Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_SOLTU1.163e-10983.55Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_MESCR1.983e-10980.95Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_FLATR4.885e-10882.25Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAPR6.380e-10882.25Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAAN3.501e-10680.95Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_PEA5.971e-10682.76Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_HUMAN1.071e-4649.49Aminomethyltransferase, mitochondrial OS=Homo sapi... [more]
GCST_MOUSE2.387e-4646.63Aminomethyltransferase, mitochondrial OS=Mus muscu... [more]
GCST_BOVIN9.069e-4648.47Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-C12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720277 ID=EY720277; Name=EY720277; organism=Citrus sinensis; type=EST; length=883bp
CACGCGTCCGGTATGCCTGGAGATGCTCTTTCGGGCTCCCAGATTTGCTT
GTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATATCGAATAAA
ATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCACCCGTCGTTT
GGCTCGGGCTGATAAGAAGACTATAGCTCGTAGACACTTTGCCTCAGATG
CTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTGGCTAATGGT
GGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAGTACAAGGA
CTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTG
ATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCT
TTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGCCCCAGGAAC
TGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAATCGATGATT
CAGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTTGTGAATGCT
GGCTGCAAGGATAAGGATCTTGCTCACATTGACGCACATATGAAGAGTTT
CACAGCCCAAGGTGGGGATGTCTCCTGGCACATCCATGATGAGAGATCTC
TTCTTGCCCTTCAGGGCCCCCTTGCTGCCCCAGTTCTTCAACACCTGACC
AAAGATGACTTGAGCAAGTTATACTCCGGGGAATTCCCAATTTGGGATAT
CAAGGGTGTATCCTGCCTTCTCACTAAGACAGGGTACCTGGGTGAANGAT
GAGTTGAATCCTCTGTCCATCTGAGCGTGCCCTGGATCTTGCCAAACCAT
CCTGGAGAAATCCCAAGGAAAGGTGTCGTTCCC
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