EY720273

Overview
NameEY720273
Unique NameEY720273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY720273 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.179e-35
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:   23 TKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAEHLRERLKKEQEE 250
            TKED+KRALEEQYGGEEELPQ NPGFNN PFKFTKYSNAYMLVYIRESDKDKIICNVDE+DIAEHLR RLKKEQEE
Sbjct:  476 TKEDVKRALEEQYGGEEELPQNNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRVRLKKEQEE 551

HSP 2 Score: 86.2705 bits (212), Expect = 2.530e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:  244 RRDVYGAWEQYLGLEHSDSAPKRAYAANQDRHTYEKPVKIYN 369
            RRDVYGAWEQYLGLEH D+APKRAYAANQ+RH YEKPVKIYN
Sbjct: 1074 RRDVYGAWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN 1115
[Close]
BLAST of EY720273 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.081e-35
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 2 
Query:   23 TKEDLKRALEEQYGGEEELPQTNPGFNNTP-FKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAEHLRERLKKEQEE 250
            TKEDLKRALEEQYGGEEELPQTNPGFNN P FKFTKYSNAYMLVYIRESDKDKIICNVDE+DIAEHLR RLKKEQEE
Sbjct:  477 TKEDLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRVRLKKEQEE 553

HSP 2 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:  244 RRDVYGAWEQYLGLEHSDSAPKRAYAANQDRHTYEKPVKIYN 369
            RRDVYGA+EQYLGLEH+D+ PKRAYAANQ+RH YEKPVKIYN
Sbjct: 1075 RRDVYGAFEQYLGLEHADTTPKRAYAANQNRHAYEKPVKIYN 1116
The following BLAST results are available for this feature:
BLAST of EY720273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP13_ARATH3.179e-3593.42Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH7.081e-3594.81Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-C08-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720273 ID=EY720273; Name=EY720273; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGGATGAAAGGGTACAAAAGAAGATCTGAAAAGGGCACTAG
AAGAGCAGTACGGTGGTGAAGAGGAGTTACCACAGACAAATCCGGGATTT
AACAACACTCCTTTTAAATTTACCAAATATTCGAATGCATATATGCTGGT
GTATATACGTGAAAGTGACAAGGACAAGATAATTTGTAATGTGGATGAGC
AGGATATTGCAGAACACCTTCGTGAAAGGTTGAAAAAAGAGCAAGAAGAG
ATGTTTATGGTGCTTGGGAGCAATATCTTGGATTGGAACACTCAGACAGT
GCTCCTAAAAGGGCATATGCTGCTAACCAGGATCGGCACACGTATGAGAA
GCCAGTTAAAATCTACAATTAGGAAACATTTGAAGATGCATGAATTTCAT
CCATGGCTGTGGATTCAGTTGGTAAGCCTCAACACCAATTGATCTGTAAA
AATGGCAAAAATGAAAAGGGATCGAGGCTATGAAAGTGAAAAGGGAAAGC
ATATGGTTGTTGACTTTATTGGGGTATTGTAATTCTTCTTCAGCTAGCTT
GGATTGGGAGGACATTTCCCCNTTTAGCAATGTGTATCTATCTGCAAGTG
TTGTCACAGATATATTTATAGGGTATAGTGGGTGATCCATTGTTTCTTTT
TTCCCCTTTTTAATTAATCCTTGTTTCTTTATTTTCCCTTTTCATCATGT
TTGCTTTCCTGATTTTTGGTTTCATGTAGATGGCTGATCACCCCTGTTGT
GAGCCTGGTTCCCAGAGAGAAATATATATCCTATTTTTTTGTTAAAAAAA
AAAAAAAAAAAAAAAAAGGGCGGGCGCTCCAAAGGAACCAGCTTAAGTAC
CCGTGCATGCAAAGTCTAACCCTCC
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