EY720255

Overview
NameEY720255
Unique NameEY720255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY720255 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.522e-11
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  334 RQKYCESIHKTVRRKTRTVMVGNVDIGSEHPIRVQS 441
            ++KYCE+IH+T RR TR V VGNV IG  HPIR+QS
Sbjct:    3 QKKYCEAIHQTERRPTRIVNVGNVGIGGNHPIRIQS 38

HSP 2 Score: 33.8834 bits (76), Expect = 3.522e-11
Identity = 14/32 (43.75%), Postives = 23/32 (71.88%), Query Frame = 2 
Query:  428 LEFKAVTTSDPNDVAGTVE*VMRVADQGADLV 523
            +  +++TTS   DV  T+E V+R+ADQG ++V
Sbjct:   34 IRIQSMTTSSTRDVEATIEQVIRLADQGCEIV 65
The following BLAST results are available for this feature:
BLAST of EY720255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ISPG_PARUW3.522e-1166.674-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-B01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720255 ID=EY720255; Name=EY720255; organism=Citrus sinensis; type=EST; length=877bp
CACGCGTCCGCAGGTTTGTTCGCTTTGCTTTCCACTCTCCAGACTCATCA
CATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTAGG
CGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTCCG
GGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGATTT
TGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATTCA
CTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTCAG
CCTGCATCAGAAGGAAGCCCCCTATTAGTGCCCAGACAAAAGTATTGTGA
ATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGGAA
ATGTAGACATTGGCAGTGAGCATCCTATTAGAGTTCAAAGCGGTGACTAC
AAGTGACCCTAACGATGTTGCTGGAACAGTGGAATAGGTAATGAGAGTAG
CAGACCAGGGAGCAGATCTTGTTCCGGATCACAGTTTCATGGGACGATAG
AGCGGCATCCTTGTTCCGAGATAAACAACCGCATTCTCCAGAAAGAAGAC
AGGTATACCTCCTGGTGAGAGATATTCGTTCTCGCCCCGTCTGTTGGCTC
GCGAAGTTGGGAGAGGGTGTCACAAAATCCGTGTACACCCGGGGATATGC
GCCTTCGAAACAGGGTCTCAGTGTCCGTCAGTGGAGGTTCCGCGGAGCGA
GGGTGTGGCGAGAGGACGGGGAGGCAGTTGGGGGGTGTAGGGAGGGGCGG
AGGGGTAGGAGAGTGAAGACTGTGGGGACGGGCGAAGGGGAGTGAGGAAG
CGACATCGGGGAGCACTTGAGATGGGT
back to top