EY720242

Overview
NameEY720242
Unique NameEY720242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720242_ssr297 microsatellite EY720242_ssr297:297..308. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11166 contig Csv1_Contig11166:1..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720242 vs. ExPASy Swiss-Prot
Match: THRC1_ARATH (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.005e-57
Identity = 107/162 (66.05%), Postives = 120/162 (74.07%), Query Frame = 3
Query:  204 TSLLK-KPISSNYPIIRASSD-NNPSQPKHTN-RXXXXXXINIRDEARRRNVIHTHKFSAKYVPFNAGPSCTESYSLDEVVYRSXSGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLVWA*RFAKSF 680
            TSLL+ +P+     +I  ++D NN   P  T  +       NIRDEARR      + FSAKYVPFNA P  TESYSLDE+VYRS SGGLLDV+HDM ALK +DGAYW+ LFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNL WA RF K F
Sbjct:   27 TSLLRHRPV-----VISCTADGNNIKAPIETAVKPPHRTEDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQF 183          

HSP 2 Score: 41.9726 bits (97), Expect = 1.005e-57
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 2
Query:  671 KEFQQMNDVWVNPRGNTHTGSFRDLGMNV 757
            K+F  MND+WV   G +HTGSF+DLGM V
Sbjct:  181 KQFLGMNDLWVKHCGISHTGSFKDLGMTV 209          
BLAST of EY720242 vs. ExPASy Swiss-Prot
Match: THRC_SOLTU (Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.811e-52
Identity = 108/176 (61.36%), Postives = 124/176 (70.45%), Query Frame = 3
Query:  240 PIIRASSDNNPSQPKHTNRXXXXXXINIRDEARRRNVIHTHKFSAKYVPFNAGPSCTESYSLDEVVYRSXSGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLVWA*RFAKSFSK*MMCGLTPAGILIQEVLGIWV*MCGVN 767
            PI   ++++  SQ KH          NIR+EARR     +H FSA+YVPFNAGP+  E YSLDE+VYRS SGGLLDVQHDM ALK +DG YW++LFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNL WA RF K F      G+T           +WV  CG++
Sbjct:   36 PIKATATNDAISQQKHRRPADE----NIREEARRH--CSSHNFSARYVPFNAGPNSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQF-----LGMT----------DLWVKHCGIS 190          
BLAST of EY720242 vs. ExPASy Swiss-Prot
Match: THRC2_ARATH (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TS2 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.935e-51
Identity = 108/199 (54.27%), Postives = 127/199 (63.82%), Query Frame = 3
Query:  171 HNHCFTSKTSQTSLLKKPISSNYPIIRASSDNNPSQPKHTNRXXXXXXINIRDEARRRNVIHTHKFSAKYVPFNAGPSCTESYSLDEVVYRSXSGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLVWA*RFAKSFSK*MMCGLTPAGILIQEVLGIWV*MCGVN 767
            H+  +    S+TSL  KP S+    +R +S +    P+   +       NIRDEARRR        SA+YVPFNA PS TESYSLDE+VYRS SG LLDVQHD  ALK YDG +W+ LFDSRVGKT WPYGSGVWSKKEWVLPEID DDIVSAFEGNSNL WA RF K +                ++  +WV  CG++
Sbjct:    8 HSATYFPSHSETSL--KPHSAASFTVRCTSASPAVPPQTPQKPRRSPDENIRDEARRRPH-QLQNLSARYVPFNAPPSSTESYSLDEIVYRSQSGALLDVQHDFAALKRYDGEFWRNLFDSRVGKTNWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQY---------------LQMNDLWVKHCGIS 188          
The following BLAST results are available for this feature:
BLAST of EY720242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
THRC1_ARATH1.005e-5766.05Threonine synthase 1, chloroplastic OS=Arabidopsis... [more]
THRC_SOLTU1.811e-5261.36Threonine synthase, chloroplastic OS=Solanum tuber... [more]
THRC2_ARATH9.935e-5154.27Threonine synthase 2, chloroplastic OS=Arabidopsis... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-003-H11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720242 ID=EY720242; Name=EY720242; organism=Citrus sinensis; type=EST; length=781bp
CCACGCGTCCGCTCGCGTCTAGTTGCATGTACAGTTCCAAGTCATCACAT
ACAACTCTCTCTCAGGCTCAGTAAGTCACAGCACAAACCTAAACCAGTCA
GCATTAAAACCCGTTTCCTCTCAAGTCAACAATGGCCGCCTCTGCTGCTC
TCTTTCACCAACCGCACTGCCACAACCATTGCTTCACCTCCAAAACATCA
CAAACCAGCCTTCTCAAAAAGCCGATCTCATCTAACTATCCCATCATCAG
AGCTTCTTCTGACAACAACCCATCTCAACCGAAACACACAAACAGAGGCG
GCGGCGGCGGTGGCATCAACATAAGGGACGAGGCACGTCGCCGGAATGTT
ATCCACACCCACAAGTTTTCTGCAAAGTACGTGCCATTCAATGCGGGGCC
GTCTTGTACCGAGTCGTATTCTCTCGACGAGGTCGTGTACAGGTCCCANT
CTGGGGGACTTCTCGACGTGCAGCACGACATGGGCGCTTTGAAGCACTAC
GACGGCGCTTACTGGAAGGCGCTGTTCGATTCACGAGTCGGCAAAACGAC
GTGGCCGTACGGATCAGGAGTTTGGTCAAAAAAAGAGTGGGTGCTGCCCG
AGATTGATAGTGATGATATCGTGAGCGCCTTCGAAGGGAACTCCAATCTG
GTCTGGGCCTGAAGATTTGCAAAGAGTTTCAGCAAATGAATGATGTGTGG
GTTAACCCCCGCGGGAATACTCATACAGGAAGTTTTAGGGATCTGGGTAT
GAATGTGTGGGGTCAACTCAGTTGAATAGGT
back to top