EY720217

Overview
NameEY720217
Unique NameEY720217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11164 contig Csv1_Contig11164:1..380. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_AQUAE (Riboflavin biosynthesis protein ribD OS=Aquifex aeolicus GN=ribD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-22
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  113 RVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGH 373
            RVVVA  DPNPL++GKG+ +LR AGI V  G+C EEA  LN  F + +++  P+  LK A +LDG+ A   G S+WIT  E+R   H
Sbjct:   98 RVVVATLDPNPLMSGKGVEKLRNAGIEVDVGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRKVAH 184          

HSP 2 Score: 41.2022 bits (95), Expect = 2.533e-22
Identity = 20/35 (57.14%), Postives = 23/35 (65.71%), Query Frame = -3
Query:    6 LARPQLRVLTGIGTVLKDDPQLTVRSVETPRQPRR 110
            L R    VL G+ TV+KDDP LTVR V T +QP R
Sbjct:  186 LRREATAVLVGVNTVIKDDPHLTVRFVPTEKQPVR 220          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_BACAM (Riboflavin biosynthesis protein ribD OS=Bacillus amyloliquefaciens GN=ribD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.227e-21
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = -1
Query:  104 RVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWR 373
            RV +A+ DPNPLV GKG+  L EAGI V TG+ R++A  LN  F+  M  GLP+  LK AASLDG++A   G S+WIT   AR D  ++R
Sbjct:   94 RVFIAVEDPNPLVAGKGITMLEEAGIEVKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQQYR 183          

HSP 2 Score: 30.8018 bits (68), Expect = 1.227e-21
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = -3
Query:    6 RVLTGIGTVLKDDPQLTVRSVETPRQPRR 92
            R+L G GTV  D+P LT R  +  +QP R
Sbjct:  188 RILVGAGTVKADNPSLTCRLPDAVKQPVR 216          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_ECOLI (Riboflavin biosynthesis protein ribD OS=Escherichia coli (strain K12) GN=ribD PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = -1
Query:   95 ARVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWRARS 376
            ARVV ++ DPNP V G+GL RL++AGI V+ G+   EA  LN GF+ RM  G P+  LK+ ASLDGR+A+ +G SQWIT P+AR D    RA+S
Sbjct:   94 ARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQS 187          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_HAEIN (Riboflavin biosynthesis protein ribD OS=Haemophilus influenzae GN=ribD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -1
Query:   95 RVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWRARS 373
            +V+ A+ DPNP V GKGL  L +AGI  T  +  ++A  +N GF+ RM +G+P+  LK+A SLDGR+A+ +G S+WITGP+AR+D  + RA+S
Sbjct:  100 KVIAAMQDPNPQVAGKGLKMLSDAGIESTVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKS 192          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_BUCBP (Riboflavin biosynthesis protein ribD OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ribD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = -1
Query:   95 ARVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWRARS 376
            +RVV+A  DPNP V+G G+  L++ GI VT G   +E++ +N GF  RM+ G+PW  LK+A+S+DGR+AL+NG S+WIT  +AR D    R +S
Sbjct:   94 SRVVIATLDPNPKVSGNGVKWLKKHGILVTIGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQHVREKS 187          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_BACSU (Riboflavin biosynthesis protein ribD OS=Bacillus subtilis GN=ribD PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.395e-19
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = -1
Query:  104 RVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWR 373
            RV VA+ DPNPLV G+G++ ++EAGI V  GI  ++A  LN  F+  M  GLP+  LK AASLDG+ A   G S+WIT   AR D  ++R
Sbjct:   94 RVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYR 183          

HSP 2 Score: 30.0314 bits (66), Expect = 1.395e-19
Identity = 13/28 (46.43%), Postives = 17/28 (60.71%), Query Frame = -3
Query:    6 VLTGIGTVLKDDPQLTVRSVETPRQPRR 89
            +L G+GTV  D+P LT R     +QP R
Sbjct:  189 ILVGVGTVKADNPSLTCRLPNVTKQPVR 216          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_CHLPN (Riboflavin biosynthesis protein ribD OS=Chlamydia pneumoniae GN=ribD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.507e-18
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = -1
Query:   95 ARVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWRARS 376
            +RV VA+ DP+P V G+G+A LR+AGI V  GI   EA A    ++ + +   PWT LK AAS+DG+ A   G SQWIT PEAR D  + RA S
Sbjct:   99 SRVFVALVDPDPKVAGQGIAMLRQAGIQVYVGIGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARHDVGKLRAES 192          

HSP 2 Score: 28.1054 bits (61), Expect = 2.507e-18
Identity = 15/31 (48.39%), Postives = 18/31 (58.06%), Query Frame = -3
Query:    6 VLTGIGTVLKDDPQLTVRSVE---TPRQPRR 89
            +L G  TVL DDP LT R  +    P+QP R
Sbjct:  195 ILVGSRTVLSDDPWLTARQPQGMLYPKQPLR 225          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_CHLMU (Riboflavin biosynthesis protein ribD OS=Chlamydia muridarum GN=ribD PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.147e-17
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = -1
Query:   95 VVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWRARS 370
            V +A+ DP+P V  +G+ARL+EAGI+V  GI  EEA A    ++ +   GLPW  +K AASLDG+++   G+SQWI+G +AR D  R RA S
Sbjct:  101 VYIALLDPDPRVCKRGVARLKEAGISVYVGIGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQARLDVGRLRAES 192          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_CHLTR (Riboflavin biosynthesis protein ribD OS=Chlamydia trachomatis GN=ribD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.742e-15
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = -1
Query:   95 ARVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWRARS 376
            A V V + DP+P V  KG+ARL+ AGI V  G+  +EA      ++ +  RGLPW  +K AASLDG++A   G SQWI+G  ARAD  + RA S
Sbjct:   99 AAVYVGLLDPDPRVCKKGVARLQAAGIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRAES 192          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_ACTPL (Riboflavin biosynthesis protein ribD OS=Actinobacillus pleuropneumoniae GN=ribD PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.968e-13
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = -1
Query:  122 RVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARA 373
            +V +   DPNPLV G+G  +LR+AG+ V  G+ +EE  ALN  F   +    P+  +K A + DG+ A  +G S+WITG  ARA
Sbjct:  107 KVFIGSSDPNPLVAGRGANQLRQAGVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARA 190          

HSP 2 Score: 24.6386 bits (52), Expect = 1.968e-13
Identity = 16/42 (38.10%), Postives = 22/42 (52.38%), Query Frame = -3
Query:    6 ARRRPSLARPQLR-VLTGIGTVLKDDPQLTVRSVETPRQPRR 128
            AR R    R Q   ++ G+ TVL D+P L  R +   +QP R
Sbjct:  188 ARARVQQTRHQYSAIMVGVDTVLADNPMLNSR-MPNAKQPVR 228          
The following BLAST results are available for this feature:
BLAST of EY720217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RIBD_AQUAE2.533e-2249.43Riboflavin biosynthesis protein ribD OS=Aquifex ae... [more]
RIBD_BACAM1.227e-2152.22Riboflavin biosynthesis protein ribD OS=Bacillus a... [more]
RIBD_ECOLI3.624e-2154.26Riboflavin biosynthesis protein ribD OS=Escherichi... [more]
RIBD_HAEIN8.074e-2149.46Riboflavin biosynthesis protein ribD OS=Haemophilu... [more]
RIBD_BUCBP4.007e-2048.94Riboflavin biosynthesis protein ribD OS=Buchnera a... [more]
RIBD_BACSU1.395e-1950.00Riboflavin biosynthesis protein ribD OS=Bacillus s... [more]
RIBD_CHLPN2.507e-1850.00Riboflavin biosynthesis protein ribD OS=Chlamydia ... [more]
RIBD_CHLMU4.147e-1748.91Riboflavin biosynthesis protein ribD OS=Chlamydia ... [more]
RIBD_CHLTR1.742e-1547.87Riboflavin biosynthesis protein ribD OS=Chlamydia ... [more]
RIBD_ACTPL1.968e-1342.86Riboflavin biosynthesis protein ribD OS=Actinobaci... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-003-F07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720217 ID=EY720217; Name=EY720217; organism=Citrus sinensis; type=EST; length=379bp
ACCGCCCGGCGCGGCTGGCGCGGCGTCTCGACGCTGCGCACGGTCAATTG
CGGATCATCCTTGAGCACGGTGCCGATGCCGGTCAGCACACGCAGCTGCG
GGCGCGCCAGCGATGGCCGTCGGCGCGCGCCTCCGGGCCGGTGATCCATT
GCGACAGGCCGTTATGCAGCGCGCTGCGGCCGTCCAGCGACGCCGCCATC
TTGAGCCAGGTCCAGGGCAGCCCGCGGCTCATGCGCGAAATGAAGCCCGC
GTTCAGGGCCAGCGCCTCTTCGCGGCAGATGCCGGTGGTGACGGCGATGC
CGGCCTCGCGCAGCCGCGCCAGGCCCTTGCCGTTGACCAGCGGATTGGGA
TCGCCGATCGCCACCACCACGCGCGCCGG
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