EY720207

Overview
NameEY720207
Unique NameEY720207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4842 contig Csv1_Contig4842:24..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720207 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  105 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 392
            PPD+    SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of EY720207 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  105 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 392
            PPD+    SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of EY720207 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  105 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 392
            PPD+    SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of EY720207 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  105 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 392
            PPD+    SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of EY720207 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  105 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 392
            PPD+    SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of EY720207 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  105 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 392
            PPD+    SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of EY720207 vs. ExPASy Swiss-Prot
Match: SFRS2_BOVIN (Splicing factor, arginine/serine-rich 2 OS=Bos taurus GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  105 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 392
            PPD+    SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of EY720207 vs. ExPASy Swiss-Prot
Match: SFR2B_HUMAN (Splicing factor, arginine/serine-rich 2B OS=Homo sapiens GN=SFRS2B PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.849e-17
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 3
Query:  105 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 365
            PPD+    +L V N+T+RT+ D L  +FEKYG+V DV+IPR+  T   RGFAFVR+    +AQ A   +DG  +DGRE+ VQ A+YG
Sbjct:    7 PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93          
BLAST of EY720207 vs. ExPASy Swiss-Prot
Match: RSP4_CAEEL (Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  108 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG-PNAEKIQQG 392
            PDI    SL + N++++TT +DL   FE+YG + DV IPRD+ +  S+GF FVR+    +A+ A+DR DG++VDGRE+ V  AKY  P+ E+  +G
Sbjct:   13 PDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRG 108          
The following BLAST results are available for this feature:
BLAST of EY720207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SFRS2_RAT3.509e-2152.04Splicing factor, arginine/serine-rich 2 OS=Rattus ... [more]
SFRS2_PIG3.509e-2152.04Splicing factor, arginine/serine-rich 2 OS=Sus scr... [more]
SFRS2_PANTR3.509e-2152.04Splicing factor, arginine/serine-rich 2 OS=Pan tro... [more]
SFRS2_MOUSE3.509e-2152.04Splicing factor, arginine/serine-rich 2 OS=Mus mus... [more]
SFRS2_HUMAN3.509e-2152.04Splicing factor, arginine/serine-rich 2 OS=Homo sa... [more]
SFRS2_CHICK3.509e-2152.04Splicing factor, arginine/serine-rich 2 OS=Gallus ... [more]
SFRS2_BOVIN3.509e-2152.04Splicing factor, arginine/serine-rich 2 OS=Bos tau... [more]
SFR2B_HUMAN6.849e-1750.57Splicing factor, arginine/serine-rich 2B OS=Homo s... [more]
RSP4_CAEEL1.993e-1645.83Probable splicing factor, arginine/serine-rich 4 O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-003-E07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720207 ID=EY720207; Name=EY720207; organism=Citrus sinensis; type=EST; length=890bp
CACGCGTCCGCGGACGCGTGGGCGGGACTCTCTCTCAGACGAACAAGCGC
GTGTTTTCAGTGAGTACAGTGAAGAAAAAGATGTCGCACTTCGGCAAATC
AGGACCCCCGGATATCAGAGACACTTACTCTCTCCTCGTCCTCAACATCA
CTTTCCGCACCACCGCAGACGATCTCTTCCCTCTATTCGAAAAGTACGGG
AAGGTCGTCGATGTCTTCATCCCTCGCGACCGAAGGACTGGTGATTCGCG
AGGTTTTGCTTTTGTTCGATACAAGTATGCAGATGAGGCGCAAAAGGCTG
TGGACAGGCTTGATGGGAGAGTTGTGGATGGAAGAGAAATTACAGTTCAG
TTCGCCAAGTACGGTCCCAATGCAGAGAAAATTCAACAAGGAAGGATAGT
GGAATCATCTTCAAAGTCAAAAGGCAGGTCTAGAAGTCGCAGTCCTCGTC
CAAGGTATAGGGATGAACACAGGGACAGGGATTACAGGAGGAGAAGTCGC
AGTAAAAGCAGGGATAGATATGATCGTGACAGGTACCGCAGCAAGGAAAG
AGATCATCGTCGCCGAAGCCGGAGCCGCAGTGCCAGTCCTGATCGTCACA
AAAACCATGGGAGAGGGCAATACGATGAAGAGCGCCACAGTAGGAGCCGA
TCTTACGAAAGTGCTCCCCGCCTCGGCATAGTCCCATTCTATAAGGAGCC
ATCTCCACGTAAGACTCATAAGGGTGAAATCAACCTGATGAACGTGCTCC
TGCTCTCACACGTGGTTCACCAGATGGGCCGCGATCTGTTCCCGAAAGTC
TTCTCCACGTAGATCGGCTGGCCATGAATGATGAAACAGCCAGGTGGGCG
ATTCTCCGATTTAATGAGTTGTTCCGGGTTCTCTTCAGAA
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