EY720116

Overview
NameEY720116
Unique NameEY720116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11154 contig Csv1_Contig11154:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720116 vs. ExPASy Swiss-Prot
Match: CDC73_RAT (Parafibromin OS=Rattus norvegicus GN=Cdc73 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.096e-20
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = 2
Query:   26 SASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQ---------VVKAYEVRDKPSTMKSEYWDRVVAVFVLGKEWQFKEWPF----KDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLXEF-VRSRSH 493
            +A+ +LIT+ N K+ L+D  ++P+D K K   G + E  T+     R +DQ         V   Y V D+P  +  + WDRVVAVFV G  WQFK WP+       V+IF KI  F++++  D V     V++W+V ++ +S +KRH DR   L  W+ L  + V+ +SH
Sbjct:  366 AATTSLITMLNAKDLLQDLKFVPSDEKKKQ--GCQRENETL---IQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY--DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSH 528          
BLAST of EY720116 vs. ExPASy Swiss-Prot
Match: CDC73_MOUSE (Parafibromin OS=Mus musculus GN=Cdc73 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.096e-20
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = 2
Query:   26 SASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQ---------VVKAYEVRDKPSTMKSEYWDRVVAVFVLGKEWQFKEWPF----KDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLXEF-VRSRSH 493
            +A+ +LIT+ N K+ L+D  ++P+D K K   G + E  T+     R +DQ         V   Y V D+P  +  + WDRVVAVFV G  WQFK WP+       V+IF KI  F++++  D V     V++W+V ++ +S +KRH DR   L  W+ L  + V+ +SH
Sbjct:  366 AATTSLITMLNAKDLLQDLKFVPSDEKKKQ--GCQRENETL---IQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY--DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSH 528          
BLAST of EY720116 vs. ExPASy Swiss-Prot
Match: CDC73_HUMAN (Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.096e-20
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = 2
Query:   26 SASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQ---------VVKAYEVRDKPSTMKSEYWDRVVAVFVLGKEWQFKEWPF----KDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLXEF-VRSRSH 493
            +A+ +LIT+ N K+ L+D  ++P+D K K   G + E  T+     R +DQ         V   Y V D+P  +  + WDRVVAVFV G  WQFK WP+       V+IF KI  F++++  D V     V++W+V ++ +S +KRH DR   L  W+ L  + V+ +SH
Sbjct:  366 AATTSLITMLNAKDLLQDLKFVPSDEKKKQ--GCQRENETL---IQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY--DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSH 528          
BLAST of EY720116 vs. ExPASy Swiss-Prot
Match: CDC73_CHICK (Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.096e-20
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = 2
Query:   26 SASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQ---------VVKAYEVRDKPSTMKSEYWDRVVAVFVLGKEWQFKEWPF----KDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLXEF-VRSRSH 493
            +A+ +LIT+ N K+ L+D  ++P+D K K   G + E  T+     R +DQ         V   Y V D+P  +  + WDRVVAVFV G  WQFK WP+       V+IF KI  F++++  D V     V++W+V ++ +S +KRH DR   L  W+ L  + V+ +SH
Sbjct:  366 AATTSLITMLNAKDLLQDLKFVPSDEKKKQ--GCQRENETL---IQRRKDQMQPGGTTVSVTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY--DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSH 528          
BLAST of EY720116 vs. ExPASy Swiss-Prot
Match: CDC73_SCHPO (Cell division control protein 73 OS=Schizosaccharomyces pombe GN=cdc73 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.936e-19
Identity = 45/154 (29.22%), Postives = 89/154 (57.79%), Query Frame = 2
Query:   29 ASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMR-PECVTVQKKFSRDRDQVVKAYEVRDKPSTMKSEYWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLXEFVRSR 487
            ++ +L+T++N+K+FLE+G+++P         G R PE + +  K S  +   ++ + + +     K +YWDRVV VF  G+ WQF+++ + +  ++F+ + GF +++  D    A     WNV+ I + + +RH DR    ++WD+L  ++ +R
Sbjct:  213 SASSLLTMHNIKKFLEEGIFVPPAEAAHAAGGGRGPELIALSHKSSNSKFGTMR-FIIVEGTEKFKPDYWDRVVCVFTTGQAWQFRDYKWSEPHQLFHHVKGFLVQYVGDPPHPA--THDWNVEGIFVERLRRHTDREVVSQLWDKLERWMENR 363          
BLAST of EY720116 vs. ExPASy Swiss-Prot
Match: CDC73_YEAST (Cell division control protein 73 OS=Saccharomyces cerevisiae GN=CDC73 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.135e-18
Identity = 51/156 (32.69%), Postives = 83/156 (53.21%), Query Frame = 2
Query:   26 SASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPSTMKSEYWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLXEFVRSRSH 493
            SA+ +++T+ N+K+FL +  Y    V  +N+  +    V ++K F R   + ++   V +     K EYWDRVVA+F  G  WQF  + +    E+F +  G+Y  F  DSV   + V+QWNV+ + + KNKR +D       W  L + + SR +
Sbjct:  244 SAASSILTVANIKQFLLESKY----VNPRNLPSVPNGLVNIEKNFERI-SRPIRFIIVDNTRMFTKPEYWDRVVAIFTTGHTWQFNNYQWNSPQELFQRCKGYYFHFAGDSV--PQHVQQWNVEKVELDKNKRFKDVEVVRYFWHSLEKELISRGY 392          
The following BLAST results are available for this feature:
BLAST of EY720116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CDC73_RAT5.096e-2036.47Parafibromin OS=Rattus norvegicus GN=Cdc73 PE=2 SV... [more]
CDC73_MOUSE5.096e-2036.47Parafibromin OS=Mus musculus GN=Cdc73 PE=2 SV=1[more]
CDC73_HUMAN5.096e-2036.47Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1[more]
CDC73_CHICK5.096e-2036.47Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1[more]
CDC73_SCHPO1.936e-1929.22Cell division control protein 73 OS=Schizosaccharo... [more]
CDC73_YEAST8.135e-1832.69Cell division control protein 73 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-C07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720116 ID=EY720116; Name=EY720116; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGACGCGTGGGCCAGTGCTTCTCAGACCTTGATAACGA
TTTATAATGTGAAGGAGTTTTTGGAGGACGGGGTTTATATACCTACTGAT
GTGAAGGTGAAGAATATGAATGGGATGAGGCCCGAGTGTGTGACGGTGCA
GAAGAAGTTCAGTAGGGATAGGGACCAGGTGGTGAAGGCTTATGAGGTGA
GGGATAAGCCGTCCACGATGAAGTCCGAGTATTGGGATAGAGTTGTGGCA
GTTTTTGTGTTGGGGAAAGAGTGGCAGTTCAAGGAGTGGCCTTTTAAGGA
TCATGTTGAGATTTTTAATAAAATTATTGGATTCTACATGCGGTTTGAAG
ATGACAGTGTAGAGTCTGCAAAGATTGTGAAGCAGTGGAATGTAAAAATC
ATTTCAATTAGCAAGAACAAGCGACACCAAGACAGGGCCGCAGCCTTGGA
AGTATGGGACAGACTANAAGAATTTGTGCGGTCACGGTCACATTCCTGAG
ATTCAAAGAATATTTTTTTCACAGTGAGAGAGGATTTATCAGAGCTGATT
CTGCTTCTGGATGACAAATTTTGCTGGGCTCAATGCAGCATTTAAACCAG
ATGCAACTGCTAACTTTTAGTTGATCTTCTCAGAGCTTGCTATCCGGATG
TTGTCGGACTATGTAATGGGGAATTTCTTGTGCATGAAGCGAGCTTGTGC
AGACTTTGTTTAAGAAGGAAATGAAGTGGTCATATGGATATACCATCATC
TTTCATGAGATANTTCGTTGCTGCAGTCATAGTTATGATTTTTCTCTGGC
AATGGTTTGTCTTTTTCATCTCCTGTNGATAAGGATGTCTTTTTCAAGTA
ATATATCAGTTGAGGAGTAGATTCTATCACGGTAGTATCCAG
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