EY720112

Overview
NameEY720112
Unique NameEY720112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11153 contig Csv1_Contig11153:1..385. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of EY720112 vs. ExPASy Swiss-Prot
Match: YNCD_ECOLI (Probable tonB-dependent receptor yncD OS=Escherichia coli (strain K12) GN=yncD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 2 
Query:   92 NGDSSGNKTYHKNTPPLSVMYASTPELHGYISAGKGFETPTQAELAYAPGNIEGCNFGLKPSESTPYEVGLKAQLSD 322
            NGD SG+ +YHK  P  S+ YA T   + Y++AG+GFETPT  EL+Y      G N GLKPS +   E+G K ++ D
Sbjct:  435 NGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNLGLKPSTNDTIEIGSKTRIGD 511
The following BLAST results are available for this feature:
BLAST of EY720112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YNCD_ECOLI2.760e-1346.75Probable tonB-dependent receptor yncD OS=Escherich... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-B11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720112 ID=EY720112; Name=EY720112; organism=Citrus sinensis; type=EST; length=386bp
GNNAAATGAGAGAGGGGAAAAAGAAAATAACCTGGGTCGCACTGAAGGGT
CCGGGTCCGGAATTCCCGGGGTCACGACCAGCTTCCTGAGCAACGGCGAC
TCAAGCGGCAACAAGACCTACCACAAGAACACGCCGCCCTTGAGCGTGAT
GTACGCCTCCACGCCCGAACTGCACGGCTACATCAGTGCCGGCAAGGGTT
TCGAGACGCCGACTCAGGCGGAACTGGCCTATGCGCCAGGCAATATCGAA
GGGTGTAACTTCGGCCTGAAACCGTCCGAAAGCACACCATATGAAGTGGG
CTTGAAGGCACAGCTGAGCGACACCCGGATCAACGCCGGCTGTCTTCCAC
ATCACCACCGAAGACGAGTTGGTGGTGAATCAATCG
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