EY720111

Overview
NameEY720111
Unique NameEY720111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720111_ssr671 microsatellite EY720111_ssr671:671..680. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 8.699e-36
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VLLDVKPWDDETDMKKLEEAVRSVQMEGL WGA KL PVGYGIKKLQIMLTIVDDLVSVD+LIEEHL EEP NE+VQ+CD+V   +I
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.041e-33
Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VL+D+KPWDDETDMKKLEEAVRS+QMEGL WGA KL PVGYGIKKL IM TIVDDLVS+DT+IEE L  EP NEYVQ+CD+V   +I
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 5.278e-33
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VL+D+KPWDDETDMKKLEEAV+S+QMEGL WGA KL PVGYGIKKLQI+ TIVDDLVS+DT+IEE L  EP NEYVQ+CD+V   +I
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 9.002e-33
Identity = 67/87 (77.01%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGA KL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NEY+Q+CD+V   +I
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 66/87 (75.86%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGA KL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NE++Q+CD+V   +I
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VLLDVKPWDDETDM KLEEAVRS++M+GLLWGA KL  VGYGIKKLQIMLTIVDDLVSVD L+E++L  EP NEY+Q+CD+V   +I
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.621e-32
Identity = 67/87 (77.01%), Postives = 74/87 (85.06%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VLL+VKPWDDETDMKKLEEAVRSVQM GL WGA KL PVGYGIKKL IM+TIVDDLVSVD LIE+HL  EP NEY+Q+ D+V   +I
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.896e-31
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VLLDVKPWDDETDMKKLEEAVRSVQ EGL  GA KL PVGYGIKKL IM+TIVDDLVSVD LIE++L  EP NEYVQ+CD+V   +I
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VL+DVKPWDDETDMKKLEEAVR V+M GL WGA KL PVGYGIKKL IM TIVDDLVS D LIE+ L  EP NEY+Q+CD+V   +I
Sbjct:  138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.202e-30
Identity = 67/87 (77.01%), Postives = 73/87 (83.91%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            VL+D+KPWDDETDMKKLEEAVRSVQMEGL WGA KL PVGYGIKKLQIMLTI+DDL S  T IEE L E P NEYVQ+CD+V   +I
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLAS--TPIEEVLCEAPINEYVQSCDIVAFNKI 216          
The following BLAST results are available for this feature:
BLAST of EY720111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B_ORYSJ8.699e-3685.06Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D2_ARATH4.041e-3377.01Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH5.278e-3375.86Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D1_ORYSJ9.002e-3377.01Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ2.619e-3275.86Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR4.468e-3275.86Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1B1_ARATH7.621e-3277.01Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D_BETVU2.896e-3178.16Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B2_ARATH1.437e-3073.56Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_WHEAT3.202e-3077.01Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-B09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720111 ID=EY720111; Name=EY720111; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGAGCATATTGATGCACTTTTAAGGATCTCTGGCGTTACTG
GTGAAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGCTACTCCC
CCGGTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACGATGATGT
GGATCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCCGAGGCAC
GCGCAGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGGCAAGTCA
TCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACATGAAGAA
GCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTCTGGGGAG
CCANCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCAAATAATG
CTTACAATTGTGGATGACTTGGTGTCTGTTGACACCCTCATTGAGGAACA
CCTGCTGGAAGAACCANTGAATGAATATGTCCAGAACTGTGATATGGTAN
CCGGCAANCGAATATGAGNTGGGGGATCCGGGGNCAANTGGGTGCGAAAN
AGGCGTCCNGGGGTGTTGGCTTGGGTANGGGAGAGANCNAAGTGGTGTGT
GTTTTGAAATGTTTGATTTTGTTTCANGGGTGTTGTGTGTGGCCCTNATG
GATTCGTCCTTCTGTGGATGCTCTCTCTCTGGAATTTGCTTACTGTGACT
GGAGTGGATATGCCTCTCTGGCATGCGCAACCTTTAGAAGCTTCATGATT
GGCAGGTGGCTTTGCCCATTTGAAGTGTTGTGAAAAGAAAAAAAAAAGGG
GGGGCGGCTCTACAGGAGCACCCTTACGTCTGGCGGGCGGGGAACATCAT
ACCCACCTGTGGGTGCCCTAAATTCATTCCCCGGCGCGCCCTTTACA
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