EY720100 | Citrus Genome Database

Overview


Name	EY720100
Unique Name	EY720100
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	895

Libraries


Library Name	Type
Sweet orange fruit, development stadium (4 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.092e-62
Identity = 70/118 (59.32%), Postives = 80/118 (67.80%), Query Frame = 1

Query:  145 LRATPFLGQSRTTANALKDVVPMGNAKYTMVISW*P*PTPSAFLSLFVSVFREIH*RYCCVQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            ++ATPFLGQ++  AN L+DVV MG+A++TM                                 N+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVI
Sbjct:   14 VKATPFLGQTKN-ANPLRDVVAMGSARFTM--------------------------------SNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98

HSP 2 Score: 127.102 bits (318), Expect = 1.092e-62
Identity = 68/103 (66.02%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFW-LSWDPGXPHGAR*GFRINGLP-VSEKEQPLPGCXYFDPLGL 886
            VIHGRWAMLGALGCI PEVLEKW+KVDFKEPVWFKAG+QIFS+G LDYLGNP L   ++   +        G   GFRINGLP V E     PG  YFDPLGL
Sbjct:   97 VIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGL 199

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.203e-45
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            VQ +  WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 95.9005 bits (237), Expect = 1.203e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 201

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.664e-45
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   41 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 98

HSP 2 Score: 97.8265 bits (242), Expect = 2.664e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   P+     FDPLGL
Sbjct:   97 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGL 197

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.472e-45
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   46 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 97

HSP 2 Score: 97.8265 bits (242), Expect = 3.472e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:   96 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 196

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.523e-45
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVI
Sbjct:   53 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 104

HSP 2 Score: 97.8265 bits (242), Expect = 4.523e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:  103 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 203

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.523e-45
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVI
Sbjct:   52 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 103

HSP 2 Score: 97.8265 bits (242), Expect = 4.523e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:  102 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 202

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.527e-45
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   33 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 90

HSP 2 Score: 97.0561 bits (240), Expect = 4.527e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   P+     FDPLGL
Sbjct:   89 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGL 189

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.895e-45
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101

HSP 2 Score: 95.9005 bits (237), Expect = 5.895e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  100 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGL 200

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.682e-45
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 95.5153 bits (236), Expect = 7.682e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 201

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.682e-45
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101

HSP 2 Score: 95.5153 bits (236), Expect = 7.682e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  100 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 200

The following BLAST results are available for this feature:

BLAST of EY720100 vs. ExPASy Swiss-Prot

BLAST of EY720100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59


Match Name	E-value	Identity	Description
CB23_SOLLC	1.092e-62	59.32	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB2A_SPIOL	1.203e-45	82.76	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_SOYBN	2.664e-45	81.03	Chlorophyll a-b binding protein 3, chloroplastic O...	[more]
CB21_MAIZE	3.472e-45	88.46	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB22_PEA	4.523e-45	86.54	Chlorophyll a-b binding protein AB80, chloroplasti...	[more]
CB28_PEA	4.523e-45	86.54	Chlorophyll a-b binding protein 8, chloroplastic O...	[more]
CB21_CUCSA	4.527e-45	81.03	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB25_NICPL	5.895e-45	81.03	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB24_TOBAC	7.682e-45	81.03	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB21_TOBAC	7.682e-45	81.03	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-703-002-A07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY720100 ID=EY720100; Name=EY720100; organism=Citrus sinensis; type=EST; length=895bp
CACCCACGCGTCCGATCTCTCTTTCTGTATTGTCTTCAGACACATATTAA
CATCACAGTTCCAACCGACACAACATCCATAATAACAACTCTCAGGACAA
TGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCTCTTAGG
GCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCTAAAAGA
TGTTGTTCCGATGGGGAATGCCAAGTACACAATGGTAATAAGTTGGTAAC
CTTAACCTACACCTTCAGCCTTTTTGTCTCTCTTTGTCTCTGTGTTTAGG
GAAATTCATTGAAGATATTGTTGTGTTCAGGGAAATGAACTGTGGTATGG
GCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAGACTCCATCAT
ACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGTTTG
TCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTGAGGTGATATT
CTTTCCTTCTTATTCTTGCCCTCTGTCGGCTGGTAATGTGGTTACAGCAA
CAAAGATATTGATACTACTATTTCAATTTGTAGGTGATCCATGGCAGGTG
GGCTATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTTCTCGAGAAAT
GGCTTAAAGTAGACTTCAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAG
ATTTTCTCAGAAGGGTGGCTTGACTACTTGGGAAACCCAACCTTGTTCAT
GCTCAAAGCATTCTGGCTGTCCTGGGATCCAGGTNGTCCTCATGGGGCTC
GTTGAGGGTTCCGTATCAATGGCCTCCCTGTGTCCGAAAAGGAACAACCT
CTACCCGGTTGCCANTATTTTGATCCCCTGGGCCTGCTGATAACC