EY720077

Overview
NameEY720077
Unique NameEY720077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720077_ssr53 microsatellite EY720077_ssr53:53..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY720077 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.115e-13
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 3 
Query:  321 KCSHCKGTLKLYNYSSMEGVLYCNPPFEPAFKESGNFNKNFHSPAK 458
            +C HC  TLKL N++S +GV+YC   F+  FK +G+  K+F    K
Sbjct:   37 RCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPK 82

HSP 2 Score: 46.595 bits (109), Expect = 1.115e-13
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 2 
Query:  218 SFIGTQQKCKVCEKTDYPVEQLSADGVVYHKSC 316
            SF GT QKC VCEKT Y V++L A+  VYHK+C
Sbjct:    3 SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKAC 35
The following BLAST results are available for this feature:
BLAST of EY720077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SF3_HELAN1.115e-1343.48Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-G01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720077 ID=EY720077; Name=EY720077; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGGATTTTTCAATTAGATCAAGCAACTGGGTTTTTTTTATT
CTTTATTATTATTATTATTATTATTTTCTGGTTCAAGTTCTAGATGGCCC
AAAGGGCTGTTGGTAGCTCATTTCAGTGCAAAATCTAGTTTTTGTAAGAT
CCATATGATGAATCAATTGGTTGGATGACTAAAAGCCCGTTCTTTTTGTA
CAGATCTAAAAGCAATGTCTTTTATTGGTACCCAACAGAAATGCAAGGTC
TGTGAGAAGACAGATTATCCAGTTGAGCAATTATCTGCTGATGGGGTTGT
TTATCACAAGTCTTGCTCTCAAGTGCTCTCACTGCAAAGGCACACTCAAG
CTGTACAATTACTCATCCATGGAAGGTGTTCTTTACTGTAACCCTCCCTT
TGAGCCCGCTTTCAAGGAGTCGGGTAACTTCAACAAGAATTTCCACTCAC
CTGCAAAGGCAGCTGAGAAGTTAACTCCTGAACTGACAAGGTTCGCTTAT
ATAGCTTGCCACCTTGTTTCTCTGCGACCCTAAAAAATGGGCTTCTTGCT
ATAAAAACATTGTTATCTGTTGGATAAGGTACTAGTGGAATACCATGCCT
CATCCATTACATTCTTCACCTGTGCACATGATGTGATGTACCATTAACCC
CACCACATTATGCCTCTCCTGGAAAGTTTATTTGCCTTTGGAAAATTCAT
TTCTCCCAATTGGTCAATGAAAAAGGATGGTTTATATCTCCGTATTCAAC
CGGTTTCCCTTGCTATGGTGATGCTCTTTTTGTTCACTAAGAATCGAACC
AGTATTTTCTTGCGGCCTTGTTAAACTTCTTCTTAGGGGGGTGTTTTTCC
CTGTCTATGGGGCCGGACTTTTCTTTTTAGAGTACTCCTTTTTGACTTCT
AAGGGAGAAATACCAACC
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