EY720069

Overview
NameEY720069
Unique NameEY720069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720069_ssr562 microsatellite EY720069_ssr562:562..573. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig988 contig Csv1_Contig988:70..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY720069 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.422e-15
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:  640 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHXVNQSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDQMKXKWMALPXFPWDECF 906
            S +L+PG+  D +L+CL     +DY S+  +N+    + +SG +Y LR+  G +EHWVY  C    WEAFD    +WM LP  P +ECF
Sbjct:   68 SGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYFSCHLNEWEAFDPRSKRWMHLPSMPQNECF 156
[Close]
BLAST of EY720069 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.270e-13
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:  613 NDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHXVNQSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDQMKXKWMALPXFP 891
            ND       S SL+  +  D +++CL     SDY S+  +N+ F  + +SG +Y LR+Q G VEHWVY  C    W AFD ++ +WM LP  P
Sbjct:  105 NDNGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYFSCQLLEWVAFDPVERRWMQLPTMP 197
[Close]
BLAST of EY720069 vs. ExPASy Swiss-Prot
Match: FBK29_ARATH (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.278e-12
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:  661 LVDDVALNCLAFACTSDYASLLFINKRFHXVNQSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDQMKXKWMALPXFPWDECF 906
            L  +  LNCLA    SD+ S+   N+ F  + +   LY LR+  GIVEHW+Y  C    WEA+D    +W+ +P   ++ECF
Sbjct:   99 LDQNALLNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLRRAKGIVEHWIYFSCRLLEWEAYDPNGDRWLRVPKMTFNECF 180
The following BLAST results are available for this feature:
BLAST of EY720069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FBK15_ARATH1.422e-1541.57F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
SKI11_ARATH2.270e-1339.78F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK29_ARATH3.278e-1239.02F-box/kelch-repeat protein At1g74510 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-F05-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720069 ID=EY720069; Name=EY720069; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGCAATTTCCGATGAAATCTCCGGTGACTCGATTCTCGAGT
TCCGATAACTCCGTCGACGAATTCCGGTAATTCTGTTTGGAGTAAACGAG
TGAGAAATTCTCCTGGAAAATTTCGGAAATTCGGCTGTATTGGGGGAATT
TGGTTTGTCTTTTTATTTGATTGCTCTGTTAAAAGTTGTATTTTTGGAAT
TTATAGAGAAATTGAAGTTAATTGATGGGTTTTTAGTTATGCCGCGAAAG
TGGGATTTTTTGGGTGTAGATCGAGAGATGGGTATAAATGAGTCATCTGC
TAAGTTTTATGGAAAGAATATATAGGCGGAGGTTCATTGTGTGCAAAGAT
CGGAATTTGTTTTCTGGTTATTGGGAGCGTCATTGAGAATTGTGGGTTGA
CACTTTCTTTTATCTTTTTAAATTTTAATCAAGATTGACTTTTTTTTTTT
TTATAGAAATTTTGCTTGATTTTGTTGGATTATAGGAAAAGAATTTTTTT
TCTCCCTTTTAACATGATAAAGAAAGCGCGTTTGGATGATATTATGGAGG
AAGTAGAAAAGGAAGAAGAAGAAGCAGCTAGTTTATCAGTAGTGAGTTGG
AAAGCAGGAGTGAATGATGGTTGTTGTCGGATTGGACCAAGTGATTCACT
TCTCCCTGGTCTTGTTGATGATGTTGCTTTGAACTGTCTTGCTTTTGCAT
GTACATCCGACTATGCATCATTGTTATTTATAAATAAGAGGTTTCATAAN
GTAAATCAGAGCGGGTATTTGTATGGGTTAAGGAAGCAATTGGGTATTGT
GGAGCATTGGGTCTACTTGGTTTGTGATCCACGGGGTTGGGAAGCATTCG
ATCAAATGAAAANGAAGTGGATGGCTTTGCCTANATTCCCNTGGGATGAG
TGTTTCACCATGCAGATAAAGAGTCTTGGCTGGGGGTAGGGAATTGTTG
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