EY720059

Overview
NameEY720059
Unique NameEY720059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720059_ssr203 microsatellite EY720059_ssr203:203..214. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.756e-31
Identity = 84/188 (44.68%), Postives = 113/188 (60.11%), Query Frame = 2
Query:   92 MDIVFSNSTLLFRQQPLVAPVRTVT-GTHRQQNIIXXXXXXXXXXKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQETSGKQEGRGNY*LEP*KYIDTLLKS 652
            MD + S+ST+L R   L  PVR+ +  T      +             LL  S      +  ++S+      +RCG   GI EI ESEF +TVL+S +PVLVEFVA  CGPC+L+ PA+E L+QEYGD+LT+VKIDHDANP+LI E+K+YG+P  ILFK+G+E  G +        +  +YID LL S
Sbjct:    1 MDSIVSSSTILMRSY-LTPPVRSCSPATSVSVKPLSSVQVTSVAANRHLLSLSSGARRTRKSSSSV------IRCG---GIKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLLNS 178          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.214e-17
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  323 SGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQE 577
            S   ++T+S F   VL S+ PVLV+F A  CGPCR+VAP V+ +AQ+Y  ++ VVK++ D NPQ+  +Y I  +PTL++FK GQ+
Sbjct:    2 SAAAQVTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQK 86          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.214e-17
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  323 SGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQE 577
            S   ++T+S F   VL S+ PVLV+F A  CGPCR+VAP V+ +AQ+Y  ++ VVK++ D NPQ+  +Y I  +PTL++FK GQ+
Sbjct:    2 SAAAQVTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQK 86          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  320 SSGIT-EITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            ++G+T E+T++ F   VL S +PVLV+F A  CGPC++VAP +E +A E  ++LTV K+D D NP++  E+++  +PT+ILF+ GQ
Sbjct:  347 NAGVTIEVTDASFFADVLSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQ 432          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  320 SSGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQETSGKQEG 598
            S G+  IT++EF + VLK+E+PVLV F A+ CGPC+L++P +   A  Y DRL VVK++ D NP  +++YK+ G+P L L K G++     EG
Sbjct:    2 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK-GEQILDSTEG 93          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.352e-17
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  320 SSGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            S  I  +++  F   VLKS +PVLV+F A  CGPC+++AP +E +A EY DRL V K + D NP    +Y I G+PTL+LFK G+
Sbjct:    2 SDAILYVSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFKAGK 86          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.595e-16
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  338 ITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            +T++ F   VL+S  PVLV+F A  CGPCR+VAP V+ +AQ+Y D++ VVK++ D NP +  +Y I  +PTL++FK+GQ
Sbjct:    7 VTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQ 85          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.641e-16
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  323 SGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            S   ++T++ F   VL S +PVLV+F A  CGPC++VAP +E +A E    LTV K+D D NP+    +++  +PTLILFK+GQ
Sbjct:    7 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQ 90          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.641e-16
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  323 SGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            S   ++T++ F   VL S +PVLV+F A  CGPC++VAP +E +A E    LTV K+D D NP+    +++  +PTLILFK+GQ
Sbjct:    7 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQ 90          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.641e-16
Identity = 39/81 (48.15%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  335 EITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQE 577
            E+ +S+F   VLKS+ PV+V+F A  CGPCR++AP ++ LA EY  RLT+ K++ D N Q   +  I G+PTL++FK+G+E
Sbjct:    6 EVHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGRE 86          
The following BLAST results are available for this feature:
BLAST of EY720059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
TRXX_ARATH1.756e-3144.68Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO1_ANASP3.214e-1748.24Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO3.214e-1748.24Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
TRXB_MYCLE7.161e-1746.51Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO2_ANASP7.161e-1746.24Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO_THIFE9.352e-1748.24Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]
THIO1_SYNE71.595e-1649.37Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_MYCTU4.641e-1646.43Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO4.641e-1646.43Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
THIO_CHLAA4.641e-1648.15Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-E02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720059 ID=EY720059; Name=EY720059; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGCTCCGTTTTTGTATCACACAAAACTGAAAACAATTCAAA
AAGAAAAGAAAATGCTCTAAAAATCTTTAATCACTTGCAAAATGGATATC
GTCTTCTCCAACTCCACTTTATTGTTCAGACAACAACCACTGGTTGCTCC
TGTTCGTACAGTTACTGGGACCCACAGGCAACAGAACATCATCACCAGCG
CTACAACAACAACAACGTCGTCAAAGAATCAGCTATTGTTCGGGTCTCGA
ACGAACCTCTCACTAAAGTCTTATAATAATTCGCTTCCCAAGTTGGCAAT
ACGCGTACGCTGCGGTGCTAGCAGTGGCATAACGGAGATTACCGAAAGTG
AGTTCCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTTGTCGAGTTC
GTGGCCAATTGATGCGGTCCTTGCCGCTTGGTTGCTCCCGCCGTCGAATG
GCTCGCCCAGGAATACGGAGACAGATTGACTGTCGTAAAGATTGATCATG
ACGCAAACCCACAACTAATAGAGGAATACAAAATTTATGGAATGCCGACC
TTGATTCTCTTCAAAAATGGGCAAGAAACTTCCGGAAAGCAGGAGGGAAG
GGGCAATTACTAACTCGAACCTTAAAAGTATATTGATACCCTTTTAAAAT
CCAACCCAATTGGCTTAACCCACTTTTAAACTGCTCCCCAAATATAGCTC
TTTTTTCAACACAATTTTGACCTTATTGGCAAAAAACAAAATGGGTAAAT
ATTTACTTTTTCCTTAGTGAAATTTGAATCCTTCCTTACCAAAACCCTGG
AAGGAATTCATTGAATAAATTTGAATTTTGTGACCCAAAACTCATCACCA
ACTTCTCTGACTCCCACCCCCACACGGGTTTTCATTCCTTTTCCTCAAAA
AAAACAAAAGGGGAGCGTT
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