EY720048

Overview
NameEY720048
Unique NameEY720048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2683 contig Csv1_Contig2683:745..1681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720048 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 395.586 bits (1015), Expect = 2.163e-109
Identity = 211/299 (70.57%), Postives = 234/299 (78.26%), Query Frame = 1
Query:   13 SMRXXXXXXXXXXLLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSASEACLMKIFVATVEAIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVSHEAQSNGSKKPRGE-----RNYFPDESTEDLQ-KDLRTRKVKRXGPVAAFDSYXXXXXXXXXXELSVGPFGLRXGNHSS 891
            SMR          LLFRILSQPALLFPPL QV+GVE+QH P+GGY S YRKQIEVPAAEATIEATAQGIAS+LCAHGPEVEWRICTIWEAAYGLIPL+SSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGS SEACLMKIFVATVE I+ RTFPPESS E TR+AR      SA+KNLA++ELR MVH+LFLESCA VELASRLLF+VLTVCVSHEAQS+GSK+PR E      N   ++   + Q  + ++R VK  GPVAAFDSY          E+ + P     GN S+
Sbjct:  379 SMRAGVAADAAAALLFRILSQPALLFPPLSQVEGVEIQHAPIGGYSSNYRKQIEVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLNSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVETILSRTFPPESSRELTRKARSSFTTRSATKNLAMSELRAMVHALFLESCAGVELASRLLFVVLTVCVSHEAQSSGSKRPRSEYASTTENIEANQPVSNNQTANRKSRNVKGQGPVAAFDSYVLAAVCALACEVQLYPMISGGGNFSN 677          
BLAST of EY720048 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 382.489 bits (981), Expect = 1.895e-105
Identity = 198/304 (65.13%), Postives = 235/304 (77.30%), Query Frame = 1
Query:   13 SMRXXXXXXXXXXLLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSASEACLMKIFVATVEAIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVSHEAQSNGSKKPRGERNYFPDESTEDLQ-KDLRTRKVKRXGPVAAFDSYXXXXXXXXXXELSVGPFGLRXGNHSSPRCTILASLP 921
            SMR          LLFRILSQP LLFPPLR  +GVE+ HEPLGGY+S Y++Q+EVPA+EATI+ATAQGIAS+LCAHGP+VEWRICTIWEAAYGL+PLSSSAVDLPEI+VA PLQPP LSW+LY+PLLKV EYLPRGS SEACLM+IFVATVEAI++RTFP E+S E +R+ R      S SKNLAVAELRTM+HSLF+ESCAS++LASRLLF+VLTVCVSH+A   GSK+P G  N+  +E T D +  + R R  KR GPVA FDSY          EL + PF  + GNHS+ + +I   +P
Sbjct:  382 SMRAGIAADTSAALLFRILSQPTLLFPPLRHAEGVELHHEPLGGYVSSYKRQLEVPASEATIDATAQGIASMLCAHGPDVEWRICTIWEAAYGLLPLSSSAVDLPEIVVAAPLQPPTLSWSLYLPLLKVFEYLPRGSPSEACLMRIFVATVEAILRRTFPSETS-EQSRKPR------SQSKNLAVAELRTMIHSLFVESCASMDLASRLLFVVLTVCVSHQALPGGSKRPTGSDNHSSEEVTNDSRLTNGRNRCKKRQGPVATFDSYVLAAVCALSCELQLFPFISKNGNHSNLKDSIKIVIP 678          
The following BLAST results are available for this feature:
BLAST of EY720048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH2.163e-10970.57Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ1.895e-10565.13Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-C11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720048 ID=EY720048; Name=EY720048; organism=Citrus sinensis; type=EST; length=937bp
CCACGCGTCCGGTCCATGCGAGCGGGTATAGCTGCTGATGCTGCTGCAGC
TTTACTTTTTCGCATACTATCACAGCCTGCATTGCTATTTCCCCCATTAA
GGCAAGTTGATGGAGTTGAAGTTCAACATGAACCTTTGGGTGGTTACATT
TCATGCTATAGGAAGCAGATAGAGGTGCCTGCAGCTGAAGCAACTATTGA
AGCCACTGCTCAAGGAATTGCATCGGTGCTTTGTGCTCATGGCCCTGAGG
TGGAATGGAGAATCTGTACAATATGGGAAGCAGCTTATGGCCTGATTCCT
TTAAGTTCCTCAGCAGTTGATCTTCCTGAAATTATAGTTGCTACTCCATT
GCAACCTCCCATATTATCATGGAACCTATACATCCCTCTCCTTAAAGTCC
TGGAATATCTTCCTCGTGGGAGTGCTTCAGAGGCATGTCTCATGAAGATA
TTTGTTGCCACTGTCGAAGCAATTATTAAAAGAACCTTCCCACCTGAGTC
CTCTCCAGAAAACACTCGAAGGGCAAGGCATCTCTCGGGCATAGGATCTG
CCTCTAAAAATCTTGCTGTGGCAGAGCTTCGAACAATGGTCCATTCACTT
TTTTTAGAATCATGTGCCTCTGTGGAGCTTGCATCACGCCTACTATTTAT
TGTCTTAACTGTGTGTGTTAGTCATGAAGCTCAGTCCAATGGGAGCAAGA
AACCAAGAGGTGAAAGAAATTATTTTCCTGATGAAAGCACCGAGGACTTA
CAGAAAGATCTGAGAACTAGAAAGGTGAAAAGACNAGGGCCTGTAGCAGC
ATTTGATTCATATGTTTTGGCTGCTGTCTGTGCTCTTGCTTGTGAGCTTT
CAGTGGGTCCCTTTGGNCTCAGGNGTGGTAATCATTCAAGTCCAAGATGC
ACAATTCTAGCCAGCCTGCCAAATAATGGNAATCTTA
back to top