EY750412

Overview
NameEY750412
Unique NameEY750412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1019
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.234e-58
Identity = 109/174 (62.64%), Postives = 138/174 (79.31%), Query Frame = 3
Query:  156 MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEMGSGSNCH 677
            MA++TSV+F++I Q S +RK +VSS+RS+    + FRFR++     V  R+S+S+SR ++ C S++    PTVA+TK+ FL  YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFALGFVTVYD+LMEGYPS+EDR AIF+AYI ALKEDPEQYR DAQKLEE     N +
Sbjct:    1 MAAVTSVSFSAITQ-SAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVHCTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNAN 169          

HSP 2 Score: 33.4982 bits (75), Expect = 4.234e-58
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 1
Query:  652 KWARGQTAISLVEFPSKKREIEGKLNNIAKR 744
            +WAR Q A +LV+F SK+ EIE    +IA+R
Sbjct:  161 EWARTQNANTLVDFSSKEGEIENIFKDIAQR 191          
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.112e-55
Identity = 92/117 (78.63%), Postives = 104/117 (88.89%), Query Frame = 3
Query:  321 SRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEMGSGSN 671
            SR +++C++TA DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQYD VFALGFVTVYD+LMEGYPS+EDR+AIF+AYITAL EDPEQYR DAQK+EE     N
Sbjct:   44 SRSVVRCVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQN 160          

HSP 2 Score: 44.2838 bits (103), Expect = 7.112e-55
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 1
Query:  652 KWARGQTAISLVEFPSKKREIEGKLNNIAKRTRGQGEFHLPPFPLLVGRFPLFK 813
            +WAR Q   SLVEF SK  EIE  L +I++R +G+G F    F   VG F L +
Sbjct:  154 EWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRF-FAVGLFRLLE 206          
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.910e-53
Identity = 103/169 (60.95%), Postives = 125/169 (73.96%), Query Frame = 3
Query:  162 SLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRA----SSSSSRMIIQCMSTAT-DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEE 653
            +++S++F ++GQ+              +SNF   R   S    C +F      S S+S+ +I CMS  T DVPP V+ETK  FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPVFALGFVTVYD+LMEGYPSD+DR+AIF+AYI AL EDP+QYRIDAQK+EE
Sbjct:    5 AISSLSFPALGQSD------------KISNFASSRPLASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEE 160          

HSP 2 Score: 38.891 bits (89), Expect = 2.910e-53
Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 1
Query:  652 KWARGQTAISLVEFPSKKREIEGKLNNIAKRTRGQGEFHLPPFPLLVGRFPLFK 813
            +WAR QT+ SLV+F SK+ +IE  L +IA R   +  F    F   VG F L +
Sbjct:  160 EWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRF-FAVGLFRLLE 212          
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_NOSP7 (Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.243e-20
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 3
Query:  369 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEMGSG 665
            TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+GY  + D+E+IF A   A+++DP+ YR DA++L+ +  G
Sbjct:    6 TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQGYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKG 104          
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_TRIEI (Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.623e-20
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  369 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEM 656
            TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +DR M+GY   ED+ +IF A I   +EDP +YR DA+ LE++
Sbjct:    6 TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDL 101          
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_ANASP (Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=thf1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.057e-20
Identity = 42/94 (44.68%), Postives = 68/94 (72.34%), Query Frame = 3
Query:  369 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLE 650
            TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR MEGY  + D+E+IF A   A++++P++YR DA++L+
Sbjct:    6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMEGYQPERDKESIFSAICQAVEQEPQRYRQDAERLQ 99          
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_ACAM1 (Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.374e-19
Identity = 42/101 (41.58%), Postives = 66/101 (65.35%), Query Frame = 3
Query:  369 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEMGSGSN 671
            TV++TK  F  ++ RP+ S+Y  V++EL+V+ HL+R    ++YDP+FALG  T +DR M+GY  + D++AIF A   A + DP Q + D Q+L E+    +
Sbjct:    6 TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKS 106          
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_ANAVT (Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.344e-19
Identity = 41/94 (43.62%), Postives = 68/94 (72.34%), Query Frame = 3
Query:  369 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLE 650
            TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+GY  + D+E+IF A   A++++P++YR DA++L+
Sbjct:    6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQGYQPERDKESIFSAICQAVEQEPQRYRQDAERLK 99          
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_CYAP7 (Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.222e-19
Identity = 43/95 (45.26%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  369 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEE 653
            TV+++K +F   + RPI S+Y  V++EL+V+ HL+     +QYDPV+ALG VT + R M+GY  D D+E+IF A   ++  DP+QYR DA+++ E
Sbjct:    6 TVSDSKRDFYTKHTRPINSVYRRVVEELMVEMHLLSVNSDFQYDPVYALGVVTSFQRFMQGYRPDADKESIFNALCQSVGGDPQQYRQDAERMIE 100          
BLAST of EY750412 vs. ExPASy Swiss-Prot
Match: THF1_CYAP4 (Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.519e-18
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  363 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKL 647
            P TV++TK  F   + RPI SIY  V++EL+V+ HL+R  +T+ YDPVFALG VT ++R M+GY    D+ +IF A   A + DP+Q + DAQ+L
Sbjct:    4 PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERFMQGYHPPADQTSIFNAICLAQELDPQQVQQDAQEL 98          
The following BLAST results are available for this feature:
BLAST of EY750412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
THF1_SOLTU4.234e-5862.64Protein THYLAKOID FORMATION1, chloroplastic OS=Sol... [more]
THF1_ORYSJ7.112e-5578.63Protein THYLAKOID FORMATION1, chloroplastic OS=Ory... [more]
THF1_ARATH2.910e-5360.95Protein THYLAKOID FORMATION 1, chloroplastic OS=Ar... [more]
THF1_NOSP71.243e-2043.43Protein thf1 OS=Nostoc punctiforme (strain ATCC 29... [more]
THF1_TRIEI1.623e-2047.92Protein thf1 OS=Trichodesmium erythraeum (strain I... [more]
THF1_ANASP8.057e-2044.68Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
THF1_ACAM11.374e-1941.58Protein thf1 OS=Acaryochloris marina (strain MBIC ... [more]
THF1_ANAVT2.344e-1943.62Protein thf1 OS=Anabaena variabilis (strain ATCC 2... [more]
THF1_CYAP75.222e-1945.26Protein thf1 OS=Cyanothece sp. (strain PCC 7424) G... [more]
THF1_CYAP41.519e-1848.42Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-016-H05-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY750412 ID=EY750412; Name=EY750412; organism=Citrus sinensis; type=EST; length=1019bp
ACCCACGCGTCCGGGAGTGAAGGGGCAAAAAACAAAACCCAAAAAAAAAA
AAAAAAAAAATTTCAAGAGGAAGAAAACCAAATGCAAACCTATCCGATTC
CTGTTCTGCACTAACTAATACATTCACAAATTTAAATTTAATAATATAAA
TTACGATGGCGTCTCTTACTTCAGTGGCGTTTACATCAATCGGTCAAACT
TCTTGTCAGAGGAAAGTCAACGTCTCGTCAACTCGTTCCTTAGTTTCTAA
TTTTGAAGGCTTTCGATTCCGTACGAGTTTGTTCTGCCATTGTGTCCGTT
TTAGAGCTTCAAGTTCAAGTTCTCGTATGATTATTCAATGCATGTCCACA
GCTACTGATGTGCCTCCTACTGTGGCCGAGACAAAGATGAATTTTCTGAA
GTTATATAAGAGACCAATCCCCAGTATTTACAACACCGTTCTACAGGAAT
TGATTGTCCAACAACATTTGATGAGGTACAAAAGAACATACCAATATGAC
CCTGTGTTTGCCCTTGGATTTGTCACTGTATATGATCGACTCATGGAAGG
CTATCCAAGTGATGAGGATCGAGAAGCCATCTTCCAAGCATACATTACGG
CACTGAAGGAGGATCCAGAACAATACAGAATTGATGCACAAAAGTTAGAG
GAAATGGGCTCGGGGTCAAACTGCCATTTCATTAGTTGAGTTCCCATCTA
AAAAAAGAGAAATTGAGGGGAAATTGAACAACATTGCAAAAAGAACCCGC
GGCCAAGGGGAATTTCACCTACCGCCCTTTCCTTTGCTGGTGGGGCGGTT
TCCCCTCTTTAAACGGGGCAAAAGCAAATGAAACCCCCAGGGTTTAAAAA
AACCTTTTGGGCATCCTTAAATGGTTAAAAAAAAAAAAGGGGGGGATTGG
GGACCCTTTATTGTGTAATTCTCCCAATTTTTTTTTTTTCCCCCACCCCG
CCCTTCTCACCCCCCAAAAAAATATTTTTGTTTATAAAAGAGAAGAATTA
TGGGGGGGGAGGATAGGGG
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