EY693272

Overview
NameEY693272
Unique NameEY693272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY693272 vs. ExPASy Swiss-Prot
Match: PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 3 
Query:   51 MGKIPPGLRTAISANTLLKTPAPTQALKSPHQFLYXXXXXXXXXXXXXXXXXXTPAPAVIFKSPELSEAIKIFNSLVTATMQTPRDRTFHNSLLQSYAXXXXXXXXXXLLNHMVKANPSFNPDRSTYHILLAQSCQAPDNSLS 479
            MGK+P   R+ + AN L++   P+                              P+    FKSP LS+A  +FNS + AT + P D  FHNS+LQSY           L  H++K+ P+F P RST+ ILL+ +C+APD+S+S
Sbjct:    1 MGKVPSSFRS-MPANLLVRKTTPSPPAPPRDFRNRTAVGGDSAKLPQNTQAPREPSLRNPFKSPNLSDAKSLFNS-IAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSIS 141
The following BLAST results are available for this feature:
BLAST of EY693272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP161_ARATH1.923e-1534.97Pentatricopeptide repeat-containing protein At2g17... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-G11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693272 ID=EY693272; Name=EY693272; organism=Citrus sinensis; type=EST; length=481bp
CCACGCGTCCGAAAGAACAAACAATCGCTAAATTAATTTCGCACACCAAA
ATGGGCAAAATTCCTCCGGGTCTCCGCACAGCAATTTCGGCGAACACCCT
TCTCAAAACACCGGCACCAACGCAAGCCCTAAAATCCCCTCATCAATTTC
TCTACAAAAATGAAAACCCCTCTAAAAAATCAGCAGCAGCAAATAAATCT
GAAAAAAAGACGCCTGCACCGGCTGTTATCTTCAAATCCCCAGAATTATC
AGAAGCCATAAAAATCTTCAATTCCCTCGTAACAGCCACAATGCAGACCC
CACGTGATCGTACCTTCCACAACTCCCTCCTCCAGTCGTACGCTTCCATC
TCCACCGATGATGACTCCATCTCTCTTCTCAACCACATGGTCAAAGCTAA
CCCATCTTTCAACCCCGACCGCTCAACTTATCACATCCTACTCGCCCAGT
CCTGCCAAGCACCTGATAATAGCCTCTCCTC
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