EY693168

Overview
NameEY693168
Unique NameEY693168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 6.968e-89
Identity = 161/210 (76.67%), Postives = 181/210 (86.19%), Query Frame = 2
Query:  176 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKGKCAA 805
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQG+SFQCELVFAKM I+PIMMSAG LESGNAGEPA +IRQRY  AADIIRKGK  A
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCA 224          
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.648e-88
Identity = 164/209 (78.47%), Postives = 184/209 (88.04%), Query Frame = 2
Query:  176 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKGK 796
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQG+SFQCELVFAKMGINPIMMSAG LESGNAGEPA +IRQRY  AADII+KGK
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 221          
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.648e-88
Identity = 164/209 (78.47%), Postives = 184/209 (88.04%), Query Frame = 2
Query:  176 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKGK 796
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQG+SFQCELVFAKMGINPIMMSAG LESGNAGEPA +IRQRY  AADII+KGK
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 221          
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 4.227e-86
Identity = 163/213 (76.53%), Postives = 181/213 (84.98%), Query Frame = 2
Query:  179 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKGKCAA 805
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQG+SFQCELVFAKMGINPIMMSAG LESGNAGEPA +IRQRY  AAD+I KGK  A
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCA 226          
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 5.521e-86
Identity = 159/210 (75.71%), Postives = 179/210 (85.24%), Query Frame = 2
Query:  179 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKGK 796
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQG+SFQCELVFAKMGINPIMMSAG LESGNAGEPA +IRQRY  A+D+I+KGK
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGK 225          
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 1.504e-83
Identity = 160/222 (72.07%), Postives = 181/222 (81.53%), Query Frame = 2
Query:  161 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKGK 796
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQG+SFQCELV AKMGINPIMMSAG LESGNAGEPA +IRQRY  AAD+I+KGK
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGK 221          
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.964e-83
Identity = 157/210 (74.76%), Postives = 173/210 (82.38%), Query Frame = 2
Query:  176 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKG 793
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQG+SFQCELVF KMGINPIMMSAG LESGNAGEPA +IRQRY  AA+IIRKG
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 224          
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 2.171e-82
Identity = 154/214 (71.96%), Postives = 173/214 (80.84%), Query Frame = 2
Query:  164 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKG 793
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQG+SFQCELVF KMGINPIMMSAG LESGNAGEPA +IRQRY  AA+IIRKG
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 224          
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 8.250e-82
Identity = 151/214 (70.56%), Postives = 174/214 (81.31%), Query Frame = 2
Query:  155 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKGK 796
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQG+SFQCELVFAKMGINPIMMSAG LESGNAGEPA +IRQRY  AADII+KGK
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 218          
BLAST of EY693168 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.984e-81
Identity = 152/212 (71.70%), Postives = 177/212 (83.49%), Query Frame = 2
Query:  164 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGRSFQCELVFAKMGINPIMMSAGXLESGNAGEPAXVIRQRYP*AADIIRKG 793
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQG+SFQCELVF KMGINPIMMSAG LESGNAGEPA +IRQRY  AA+IIRKG
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 219          
The following BLAST results are available for this feature:
BLAST of EY693168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_MALDO6.968e-8976.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.648e-8878.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.648e-8878.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.227e-8676.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU5.521e-8675.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.504e-8372.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.964e-8374.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.171e-8271.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA8.250e-8270.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN6.984e-8171.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-F08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693168 ID=EY693168; Name=EY693168; organism=Citrus sinensis; type=EST; length=910bp
GTACACTCAAAGAAACCACTATAAGTCTTCACTCTGATCTTCAATTCTCT
CCTCAAAGAGCACAACACGCACTCAGCGCATTGCTTCGCTTTCCTTTGCC
TGCATTACAGCGTGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCT
CGCTAGCCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTG
CTGCAACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAG
GTAAGCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGAT
TACTGCTGAAGTCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGG
GCCTTGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAA
GGTGCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTA
TGCTGTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACA
ACTTGGACAACACGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGAC
AAGCTTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAA
GGTTCCTCTCATCTTGGGTATCTGGGGAGGCAAAGGACAAGGAAGATCAT
TCCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCAACCCAATTATGATG
AGTGCCGGAGNATTGGAAAGTGGCAATGCTGGAGAACCCGCNNTAGTGAT
CAGGCAGAGGTACCCGTGAGCAGCTGACATTATCAGGAAGGGAAAATGTG
CTGCCTCATGATCATGATCTTGATGCAGGAACTGGTCGATGGGTGGCACA
CCCAGTAACAGATAACACCAAATGGTTACGCCACCTCATGAACATGCTGA
TAACCCACTT
back to top