EY693055

Overview
NameEY693055
Unique NameEY693055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693055 vs. ExPASy Swiss-Prot
Match: VDE_TOBAC (Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.368e-85
Identity = 138/162 (85.19%), Postives = 156/162 (96.30%), Query Frame = 2
Query:   11 ELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVRSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFVQDPIHPGILYNHDNEYLHYKDDW 496
            ELA+CISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVP+KSD+G+FPVPDP++LV+ F++KDF+GKW+I+ GLNP+FD FDCQLHEFHTE NKL+GNLSWRIRTPDGGFFTRSA+Q+FVQDP +PGILYNHDNEYL Y+DDW
Sbjct:  151 ELAKCISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGDFPVPDPSVLVQKFDMKDFSGKWFITRGLNPTFDAFDCQLHEFHTEENKLVGNLSWRIRTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLLYQDDW 312          
BLAST of EY693055 vs. ExPASy Swiss-Prot
Match: VDE_ARATH (Violaxanthin de-epoxidase, chloroplastic OS=Arabidopsis thaliana GN=VDE1 PE=1 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.851e-84
Identity = 138/163 (84.66%), Postives = 154/163 (94.48%), Query Frame = 2
Query:   11 ELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVRSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTE-SNKLIGNLSWRIRTPDGGFFTRSAMQRFVQDPIHPGILYNHDNEYLHYKDDW 496
            ELA+CI+NPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVP+KSDLGEFP PDP++LV++FNI DFNGKWYI+SGLNP+FD FDCQLHEFHTE  NKL+GN+SWRI+T D GFFTRSA+Q+FVQDP  PG+LYNHDNEYLHY+DDW
Sbjct:  130 ELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISWRIKTLDSGFFTRSAVQKFVQDPNQPGVLYNHDNEYLHYQDDW 292          
BLAST of EY693055 vs. ExPASy Swiss-Prot
Match: VDE_SPIOL (Violaxanthin de-epoxidase, chloroplastic OS=Spinacia oleracea GN=VDE1 PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 1.084e-83
Identity = 134/162 (82.72%), Postives = 151/162 (93.21%), Query Frame = 2
Query:   11 ELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVRSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFVQDPIHPGILYNHDNEYLHYKDDW 496
            ELA+CI+NP+CAANVACLQTCNNRPDETECQIKCGDLF N VVDEFNECAVSRKKCVPQKSD+GEFPVPDP++LV+SFN+ DFNGKW+ISSGLNP+FD FDCQLHEFH E  KL+GNLSWRI+TPDGGFFTR+A+Q+F QDP  PG+LYNHDN YLHY+DDW
Sbjct:  141 ELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFANKVVDEFNECAVSRKKCVPQKSDVGEFPVPDPSVLVKSFNMADFNGKWFISSGLNPTFDAFDCQLHEFHLEDGKLVGNLSWRIKTPDGGFFTRTAVQKFAQDPSQPGMLYNHDNAYLHYQDDW 302          
BLAST of EY693055 vs. ExPASy Swiss-Prot
Match: VDE_LACSA (Violaxanthin de-epoxidase, chloroplastic OS=Lactuca sativa GN=VDE1 PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.498e-80
Identity = 131/162 (80.86%), Postives = 152/162 (93.83%), Query Frame = 2
Query:   11 ELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVRSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFVQDPIHPGILYNHDNEYLHYKDDW 496
            ELA+CI+NP+CAANVACLQTCNNRPDETECQIKCGDLFENSVVD+FNECAVSRKKCVP+KSD+GEFPVPD   +V++FN+KDF+GKWYI+SGLNP+FD FDCQLHEFH E++KL+GNL+WRI+T DGGFFTRSA+Q FVQDP  PG LYNHDNE+LHY+DDW
Sbjct:  142 ELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFENSVVDQFNECAVSRKKCVPRKSDVGEFPVPDRNAVVQNFNMKDFSGKWYITSGLNPTFDAFDCQLHEFHMENDKLVGNLTWRIKTLDGGFFTRSAVQTFVQDPDLPGALYNHDNEFLHYQDDW 303          
The following BLAST results are available for this feature:
BLAST of EY693055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VDE_TOBAC3.368e-8585.19Violaxanthin de-epoxidase, chloroplastic OS=Nicoti... [more]
VDE_ARATH2.851e-8484.66Violaxanthin de-epoxidase, chloroplastic OS=Arabid... [more]
VDE_SPIOL1.084e-8382.72Violaxanthin de-epoxidase, chloroplastic OS=Spinac... [more]
VDE_LACSA2.498e-8080.86Violaxanthin de-epoxidase, chloroplastic OS=Lactuc... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-C09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693055 ID=EY693055; Name=EY693055; organism=Citrus sinensis; type=EST; length=878bp
CCACGCGTCCGAACTTGCTGAGTGCATTTCAAATCCGGCATGTGCTGCCA
ATGTTGCTTGCCTTCAAACCTGCAACAATCGGCCTGATGAGACTGAATGC
CAGATAAAATGTGGGGACCTGTTTGAAAACAGTGTTGTTGATGAGTTTAA
TGAGTGTGCGGTCTCAAGAAAGAAGTGTGTACCACAGAAATCTGATTTAG
GGGAATTTCCTGTCCCTGATCCTGCCATTCTAGTTAGAAGTTTTAACATC
AAAGACTTCAATGGGAAGTGGTACATTTCTAGTGGTTTAAATCCTTCCTT
CGATACTTTTGATTGCCAATTGCATGAATTCCATACAGAATCCAACAAAC
TCATAGGAAATTTATCGTGGAGAATAAGAACTCCAGATGGTGGTTTTTTC
ACCCGATCAGCTATGCAGAGATTTGTTCAAGATCCAATTCATCCTGGGAT
ACTCTATAATCACGACAATGAATACCTTCACTATAAAGATGACTGGTAAA
TACCTTTTCTGCATTCTAATAAAGCTCCTGGTCTTACTTCTTTGCAAATA
CTGATCAGTCTTCTGCTGTTACCACTTAGTGAACTCCAGTTCACTTGCTA
ATGAACCTTCAATATTTTCTTCACTAGCTTATGACTATGAATAACTTTGT
AAGGACGTGAAGTATGGATTTTGATAGTATCTTTTCAGCACTGATGTGAT
GAACCCTTTGTAGGGTCTAAAAACGGGTGGCACTTACACTAATGATTCAG
AAAGTATATTACATCAAAAAAATTTTGCTTTCTGTTGNAACAATCCCATG
GATAATCTGCTTGCGTCTGGAGTTTTCATTATAAACTAAATNAAGATTTT
TGGGCATAATCAACGAGATGAACTGTCA
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