EY693039

Overview
NameEY693039
Unique NameEY693039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY693039 vs. ExPASy Swiss-Prot
Match: CBWD1_RAT (COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2)

HSP 1 Score: 51.9878 bits (123), Expect = 6.695e-14
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  121 PHEMSHNSL*ERLAF--HLGVTVITVFLGTGKSTLVNYILSGKHVKTIAGILNELGE 285
            P E  H    E L F   + VT++T +LG GK+TL+NYIL+ +H + IA ILNE GE
Sbjct:   23 PIETKHQEKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGE 79

HSP 2 Score: 46.595 bits (109), Expect = 6.695e-14
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  344 EWVEIANGCICCTVNHRICQTLEHLVHRKDRLDRILLYTT 463
            EW+E+ NGC+CC+V     + +E+L+ +K + D ILL TT
Sbjct:   98 EWLELRNGCLCCSVKDNGLKAIENLMQKKGKFDYILLETT 137
[Close]
BLAST of EY693039 vs. ExPASy Swiss-Prot
Match: CBWD2_HUMAN (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.906e-13
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  157 LAFHLGVTVITVFLGTGKSTLVNYILSGKHVKTIAGILNELGE 285
            L   + VT+IT +LG GK+TL+NYIL+ +H K +A ILNE GE
Sbjct:   38 LGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGE 80

HSP 2 Score: 46.595 bits (109), Expect = 1.906e-13
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  344 EWVEIANGCICCTVNHRICQTLEHLVHRKDRLDRILLYTT 463
            EW+E+ NGC+CC+V     + +E+L+ +K + D ILL TT
Sbjct:   99 EWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETT 138
[Close]
BLAST of EY693039 vs. ExPASy Swiss-Prot
Match: CBWD1_HUMAN (COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.476e-13
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  157 LAFHLGVTVITVFLGTGKSTLVNYILSGKHVKTIAGILNELGE 285
            L   + VT+IT +LG GK+TL+NYIL+ +H K +A ILNE GE
Sbjct:   38 LGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGE 80

HSP 2 Score: 46.2098 bits (108), Expect = 2.476e-13
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  344 EWVEIANGCICCTVNHRICQTLEHLVHRKDRLDRILLYTT 463
            EW+E+ NGC+CC+V     + +E+L+ +K + D ILL TT
Sbjct:   99 EWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETT 138
[Close]
BLAST of EY693039 vs. ExPASy Swiss-Prot
Match: CBWD6_HUMAN (COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 3.216e-13
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  157 LAFHLGVTVITVFLGTGKSTLVNYILSGKHVKTIAGILNELGE 285
            L   + VT+IT +LG GK+TL+NYIL+ +H K +A ILNE GE
Sbjct:   38 LGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGE 80

HSP 2 Score: 46.595 bits (109), Expect = 3.216e-13
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  344 EWVEIANGCICCTVNHRICQTLEHLVHRKDRLDRILLYTT 463
            EW+E+ NGC+CC+V     + +E+L+ +K + D ILL TT
Sbjct:   99 EWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETT 138
[Close]
BLAST of EY693039 vs. ExPASy Swiss-Prot
Match: CBWD5_HUMAN (COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 3.216e-13
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  157 LAFHLGVTVITVFLGTGKSTLVNYILSGKHVKTIAGILNELGE 285
            L   + VT+IT +LG GK+TL+NYIL+ +H K +A ILNE GE
Sbjct:   38 LGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGE 80

HSP 2 Score: 46.595 bits (109), Expect = 3.216e-13
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  344 EWVEIANGCICCTVNHRICQTLEHLVHRKDRLDRILLYTT 463
            EW+E+ NGC+CC+V     + +E+L+ +K + D ILL TT
Sbjct:   99 EWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETT 138
[Close]
BLAST of EY693039 vs. ExPASy Swiss-Prot
Match: CBWD3_HUMAN (COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 3.216e-13
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  157 LAFHLGVTVITVFLGTGKSTLVNYILSGKHVKTIAGILNELGE 285
            L   + VT+IT +LG GK+TL+NYIL+ +H K +A ILNE GE
Sbjct:   38 LGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGE 80

HSP 2 Score: 46.595 bits (109), Expect = 3.216e-13
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  344 EWVEIANGCICCTVNHRICQTLEHLVHRKDRLDRILLYTT 463
            EW+E+ NGC+CC+V     + +E+L+ +K + D ILL TT
Sbjct:   99 EWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETT 138
[Close]
BLAST of EY693039 vs. ExPASy Swiss-Prot
Match: CBWD1_MOUSE (COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.152e-13
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:  175 VTVITVFLGTGKSTLVNYILSGKHVKTIAGILNELGE 285
            VT++T +LG GK+TL+NYIL+ +H + IA ILNE GE
Sbjct:   42 VTIVTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGE 78

HSP 2 Score: 46.2098 bits (108), Expect = 9.152e-13
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  344 EWVEIANGCICCTVNHRICQTLEHLVHRKDRLDRILLYTT 463
            EW+E+ NGC+CC+V     + +E+L+ +K + D ILL TT
Sbjct:   97 EWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETT 136
The following BLAST results are available for this feature:
BLAST of EY693039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CBWD1_RAT6.695e-1449.12COBW domain-containing protein 1 OS=Rattus norvegi... [more]
CBWD2_HUMAN1.906e-1355.81COBW domain-containing protein 2 OS=Homo sapiens G... [more]
CBWD1_HUMAN2.476e-1355.81COBW domain-containing protein 1 OS=Homo sapiens G... [more]
CBWD6_HUMAN3.216e-1355.81COBW domain-containing protein 6 OS=Homo sapiens G... [more]
CBWD5_HUMAN3.216e-1355.81COBW domain-containing protein 5 OS=Homo sapiens G... [more]
CBWD3_HUMAN3.216e-1355.81COBW domain-containing protein 3 OS=Homo sapiens G... [more]
CBWD1_MOUSE9.152e-1359.46COBW domain-containing protein 1 OS=Mus musculus G... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-B05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693039 ID=EY693039; Name=EY693039; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGGTAACTCTCTATATATAATAAACTTGAACTTTAATCCTT
TTTTATTCTATTGAACATGGATGACTATAAAAAACATCCACCTCTCAGCT
GTTCAAATTGACTACACTCACCTCATGAGATGTCTCACAACTCTCTATGA
GAACGACTAGCGTTTCATTTAGGCGTAACCGTTATCACTGTCTTTCTTGG
AACTGGCAAATCCACTCTTGTTAATTACATCTTGAGTGGGAAACATGTAA
AGACAATTGCTGGCATCTTGAATGAGCTCGGTGAAAACATTGGATGATGA
TAGAGCAATGATTAATGAAGGAGAATGATGCGCACTAGTTTAAGAGTGGG
TGGAGATAGCAAATGGGTGCATTTGTTGCACTGTAAATCATAGGATATGT
CAAACACTCGAACATCTTGTACATAGAAAAGACAGACTGGATCGTATTTT
GCTCTACACCACTGTGCACAACAAATCCTGCTCCTCTGGCATCTGGTCTT
TAGTGGGATGACCCTCTGGAATCATCTGTCAGGCTTGATTCTATTATCAC
TGTTGTGGATGCCGACTATCTTCTATTCTCTATTGATAACAATCGCCACT
TGTCTTCCTGTCCTGTATTCATTCCTCCTATAGCTACTGCTGATGATGTG
ATTCTTAGCGAAGACGATTTGAGCTCTCCTGACCATTCTAGAGATTCTCT
TCATGACTTGCAGAACGACATAATGAGATGATCGTCCGTGACANTGTCTC
CACTCGGTTCAATGCAAGTTGACCTGTCTGATTGATATCATGAACGAGCT
ATGATGCATACTTGAAGATCCTCTAAAGGACTGTTGTAGGACCCTACTAT
CATGCTCTCAGAGCTCTTGACCATACGGCGAACTTGACACTGTTGACACT
GCTCTTAACCTGTA
back to top