EY693017

Overview
NameEY693017
Unique NameEY693017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.350e-73
Identity = 127/177 (71.75%), Postives = 148/177 (83.62%), Query Frame = 2
Query:   53 ISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPGV 583
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGR QCMKVWPP GLKK ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+V REHH SPGYYDGRYWTMWKLPM+GCTD+ Q +K+VGE   EYP++F+R+I  DN RQVQ ++FI A+PPGV
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.701e-73
Identity = 131/182 (71.98%), Postives = 152/182 (83.52%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPGV 583
            MA SMISSATVA  +RAS  Q+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGR QCM+VWPP GLKK ETLSYLPPLS E L KE++YL+R   IPCLEFELE G+V REH++SPGYYDGRYWTMWKLPM+GC D++Q LK++ E    YP +F+RII  DNKRQVQ ++FIA +PPGV
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.143e-72
Identity = 131/180 (72.78%), Postives = 153/180 (85.00%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            MASSMISSATVAT +RA+  QA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGR QCMKVWPP GL+K ETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +V RE+++SPGYYDGRYW MWKLPM+GCTDATQ L ++ EA   YP S +RII  DNKRQVQ ++FIA +PP
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 8.192e-71
Identity = 130/183 (71.04%), Postives = 152/183 (83.06%), Query Frame = 2
Query:   38 MASSMISSATVAT--ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASSMISS TVAT  A+R +  QA MVAPF GLKSSSAFP T+K+N DITSIASNGGR QCM+VWPP GLKK ETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+V RE+H+SPGYYDGRYWTMWKLPM+GCTD++Q LK++ EA   YP SF+RII  DN RQVQ ++FIA +P G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.397e-70
Identity = 123/176 (69.89%), Postives = 146/176 (82.95%), Query Frame = 2
Query:   47 SMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            ++ISSA V T NRAS  QA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGR  CM+VWPP G KK ETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+V RE+H+SPGYYDGRYWTMW+LP++G TD++Q LK++ +   EYP SF+RII  DN RQVQ ++FIA  P
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.383e-70
Identity = 130/183 (71.04%), Postives = 152/183 (83.06%), Query Frame = 2
Query:   38 MASSMISSATVAT--ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASSMISS TVAT  A+R +  QA MVAPFTGLKSSSA P T+K+N DITSIASNGGR QCM+VWPP GLKK ETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+V RE+H+SPGYYDGRYWTMWKLPM+GCTD++Q LK++ EA   YP SF+RII  DN RQVQ ++FIA +P G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.635e-69
Identity = 125/182 (68.68%), Postives = 152/182 (83.52%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASS++SSA VAT  R+++ QASMVAPFTGLKS+++FP TKK NN DITS+ASNGGR +CM+VWPP  +KK ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+V RE+HKSPGYYDGRYWTMWKLPM+GCTDATQ L +V EA   YP +++RII  DN RQVQ ++FIA +P G
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.870e-69
Identity = 122/181 (67.40%), Postives = 144/181 (79.56%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASSM+S+ATVA+ NR S  QA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+ QCMKVWP  G+KK ETLSYLPPL+ E L  E+ YL+RSGWIPCLEFELE G V REH + PGYYDGRYWTMWKLPM+GCTDA Q LK++ E    +P  + RII  DN RQVQ ++F+A +PPG
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.870e-69
Identity = 127/181 (70.17%), Postives = 144/181 (79.56%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASSMISS  V T NRA  G   MVAPFTGLKS + FP T+KTNNDITSIASNGGR QCM+VWPP G KK ETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+V REH++SP YYDGRYWTMWKLPM+GCTDA+Q LK++ EA   YP+ F+RII  DN RQVQ ++FIA +PPG
Sbjct:    1 MASSMISSPAVTTVNRAGAG---MVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.870e-69
Identity = 124/182 (68.13%), Postives = 151/182 (82.97%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASS++SSA VAT  R+++ QASMVAPFTGLKS+++FP TKK NN DITS+ASNGGR +CM+VWPP  +KK ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+V REH+ SPGYYDGRYWTMWKLPM+GCTD TQ L +V EA N YP +++RII  DN RQVQ ++FIA +P G
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
The following BLAST results are available for this feature:
BLAST of EY693017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS_LACSA1.350e-7371.75Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE6.701e-7371.98Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR1.143e-7272.78Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY8.192e-7171.04Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA1.397e-7069.89Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP2.383e-7071.04Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU2.635e-6968.68Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_MANES5.870e-6967.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN5.870e-6970.17Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS0_SOLTU5.870e-6968.13Ribulose bisphosphate carboxylase small chain C, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-H07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693017 ID=EY693017; Name=EY693017; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCGAAGGTAGAAGAAGGAGCAGAACCAATGGCTTCCTCAA
TGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGGTCAG
GCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCC
AGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCG
GAAGAGACCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGATC
GAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGA
AATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGT
TGGAGAAAGGATGGGTGGACCGTGAGCACCACAAGTCACCAGGATACTAC
GATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGA
TGCAACCCAAGGTTTGAAGGACGTTGGGGAGGCCCACAATGAATACCCAC
ATTCATTCGTCCGAATTATCGCATCTGACAACAAGCGTCAAGTGCAGAGC
GTCACCTTCATTGCTGCTCAGCCACCAGGCGTCTAGGTTCCCTATTAGAT
CTGTGCTACCACCCACGCACATTGNTGGATATTATTATGTGAACCGCCAT
AATGNATCATCGATCAATGGGGGAGTCTGGTAGCGTTCATTTTCACTTAN
GCTGCTGGAGCTGCAGCTCAAACTTATGTGGTATCTGCGCGACTATGGCT
CTCTCTTATTATTAAATGAATTAAAAATCTGATCCCTGTGATTACTGTCA
TTAAACCGGGCCGCGGAGGTCCATTTATGAGCGGGATTACTGCAATAAAG
GAGACCTTATATTTCTGGCAACAGCTGAAAAAGAGC
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