EY713773
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.070e-18 Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 V P GLK+S+ FP T+ TN+DITSIASN G V CM+ PP + S +PP T+ + + E+ YL+R WIPC+ + +KG+++ ++H SP YYD + ++G+ D++ ++ D + EY Sbjct: 23 VAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTE--EQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRL-PLFGATDSSQVLKELADCKAEY 151
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.193e-16 Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRDSLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 V P GLK++S FP T N+DITS+ASN G VQCM+ PP + P P++L E+ YLLRS+WIPC+ + ++G++H P YYD + M+G D+ ++ + + EY Sbjct: 25 VAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAK-EVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKL-PMFGCTDSAQVLEELENCKKEY 153 HSP 2 Score: 21.1718 bits (43), Expect = 2.193e-16 Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2 Query: 41 VASSRISSTSVATAN 85 +ASS ISS ++AT N Sbjct: 1 MASSMISSATIATVN 15
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.530e-16 Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRDSLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 V P GLK+++ FP + N DITSIASN G VQCM+ PP + P +L S EI YLL+S W+PC+ + ++G+++ + H SP YYD + M+G DAT +V + + Y Sbjct: 23 VAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLS-EIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVEEAKKAY 151
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.705e-16 Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 1 Query: 121 PVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 P GLK++ FP T+ N+D +S+ SN G VQCMK PP L+ S +PP +D + S EI YL+R++WIPC+ + + G+++ + H SP YYD + M+G D+ +V + + EY Sbjct: 25 PFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD--EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKL-PMFGCTDSAQVMKEVGECKKEY 151 HSP 2 Score: 20.7866 bits (42), Expect = 3.705e-16 Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2 Query: 56 ISSTSVATANRT 91 ISS+++AT NRT Sbjct: 4 ISSSAIATVNRT 15
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16 Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 1 Query: 118 TPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 TP GLK+S+ FP T+ N+DITSI SN V CM+ PP + S +PP TD L E+ YLLR W+PCV + +KG++H + SP YYD + ++G+ DA +V + + EY Sbjct: 23 TPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLK--EVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRL-PLFGTTDAAQVLKEVAECKAEY 149
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16 Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1 Query: 115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 V P GLK+++ FP + N DITSIASN G V CM+ PP ++ S +P +D L EI YLL++ W+PC+ + + G+++ ++H SP YYD + M+G DAT +V + + Y Sbjct: 23 VAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLS--EIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQEAKKAY 151
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16 Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1 Query: 115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 V P GLK+++ FP + N DITSIASN G V CM+ PP ++ S +P +D L EI YLL++ W+PC+ + + G+++ ++H SP YYD + M+G DAT +V + + Y Sbjct: 23 VAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLS--EIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQEAKKAY 151
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16 Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 V P GLK+S+ FP T+ N DITSIASN G V CM+ PP ++ S +P +D L EI YLL++ W+PC+ + + G+++ +++ SP YYD + M+G DAT +V + + Y Sbjct: 23 VAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLS--EIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQEAKKAY 151
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16 Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 + P GLK+++ FP + N DITSIASN G V+CM+ PP ++ S +P TD L E+ YLL++ W+PC+ + + G+++ ++H SP YYD + M+G DAT +V + + Y Sbjct: 24 IAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLL--KEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQECKKSY 152
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16 Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 1 Query: 115 VTPVAGLKTSSDFPATE-NTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507 V P GLK+++ FP T+ N N DITS+ASN G V+CM+ PP ++ S +P +D L EI YLL++ W+PC+ + ++G+++ +++ SP YYD + M+G DAT +V + + Y Sbjct: 23 VAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLS--EIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQEAKKAY 152 The following BLAST results are available for this feature:
BLAST of EY713773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >EY713773 ID=EY713773; Name=EY713773; organism=Citrus sinensis; type=EST; length=874bpback to top |