EY713773

Overview
NameEY713773
Unique NameEY713773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.070e-18
Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            V P  GLK+S+ FP T+ TN+DITSIASN G V CM+  PP   +     S +PP T+  +  + E+ YL+R  WIPC+ +  +KG+++ ++H SP YYD        +  ++G+ D++    ++ D + EY
Sbjct:   23 VAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTE--EQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRL-PLFGATDSSQVLKELADCKAEY 151          
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.193e-16
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRDSLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            V P  GLK++S FP T   N+DITS+ASN G VQCM+  PP   +        P   P++L   E+ YLLRS+WIPC+ +  ++G++H      P YYD        +  M+G  D+     ++ + + EY
Sbjct:   25 VAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAK-EVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKL-PMFGCTDSAQVLEELENCKKEY 153          

HSP 2 Score: 21.1718 bits (43), Expect = 2.193e-16
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2
Query:   41 VASSRISSTSVATAN 85
            +ASS ISS ++AT N
Sbjct:    1 MASSMISSATIATVN 15          
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.530e-16
Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRDSLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            V P  GLK+++ FP +   N DITSIASN G VQCM+  PP   +        P     +L S EI YLL+S W+PC+ +  ++G+++ + H SP YYD        +  M+G  DAT    +V + +  Y
Sbjct:   23 VAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLS-EIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVEEAKKAY 151          
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.705e-16
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  121 PVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            P  GLK++  FP T+  N+D +S+ SN G VQCMK  PP  L+     S +PP +D  +  S EI YL+R++WIPC+ +  + G+++ + H SP YYD        +  M+G  D+     +V + + EY
Sbjct:   25 PFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD--EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKL-PMFGCTDSAQVMKEVGECKKEY 151          

HSP 2 Score: 20.7866 bits (42), Expect = 3.705e-16
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   56 ISSTSVATANRT 91
            ISS+++AT NRT
Sbjct:    4 ISSSAIATVNRT 15          
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  118 TPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            TP  GLK+S+ FP T+  N+DITSI SN   V CM+  PP   +     S +PP TD   L   E+ YLLR  W+PCV +  +KG++H   + SP YYD        +  ++G+ DA     +V + + EY
Sbjct:   23 TPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLK--EVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRL-PLFGTTDAAQVLKEVAECKAEY 149          
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            V P  GLK+++ FP +   N DITSIASN G V CM+  PP  ++     S +P  +D   L   EI YLL++ W+PC+ +  + G+++ ++H SP YYD        +  M+G  DAT    +V + +  Y
Sbjct:   23 VAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLS--EIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQEAKKAY 151          
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            V P  GLK+++ FP +   N DITSIASN G V CM+  PP  ++     S +P  +D   L   EI YLL++ W+PC+ +  + G+++ ++H SP YYD        +  M+G  DAT    +V + +  Y
Sbjct:   23 VAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLS--EIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQEAKKAY 151          
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            V P  GLK+S+ FP T+  N DITSIASN G V CM+  PP  ++     S +P  +D   L   EI YLL++ W+PC+ +  + G+++ +++ SP YYD        +  M+G  DAT    +V + +  Y
Sbjct:   23 VAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLS--EIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQEAKKAY 151          
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  115 VTPVAGLKTSSDFPATENTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            + P  GLK+++ FP +   N DITSIASN G V+CM+  PP  ++     S +P  TD   L   E+ YLL++ W+PC+ +  + G+++ ++H SP YYD        +  M+G  DAT    +V + +  Y
Sbjct:   24 IAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLL--KEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQECKKSY 152          
BLAST of EY713773 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  115 VTPVAGLKTSSDFPATE-NTNDDITSIASNSGIVQCMKERPPAELE*LRD-SLIPPATDPMKLCSFEIRYLLRSRWIPCV*YMAKKGWLHHDDHGSPEYYDRDATGQSGICTMYGSNDATHETTDVVDDQNEY 507
            V P  GLK+++ FP T+ N N DITS+ASN G V+CM+  PP  ++     S +P  +D   L   EI YLL++ W+PC+ +  ++G+++ +++ SP YYD        +  M+G  DAT    +V + +  Y
Sbjct:   23 VAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLS--EIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKL-PMFGCTDATQVLAEVQEAKKAY 152          
The following BLAST results are available for this feature:
BLAST of EY713773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RBS_MEDSA2.070e-1837.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GOSHI2.193e-1636.64Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL2.530e-1637.40Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS_LACSA3.705e-1636.92Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TRIRP4.316e-1638.93Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_SOLLC4.316e-1636.36Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC4.316e-1636.36Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS2A_SOLLC4.316e-1637.12Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS1_SOLTU4.316e-1635.61Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SOLLC7.362e-1636.09Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-034-G05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY713773 ID=EY713773; Name=EY713773; organism=Citrus sinensis; type=EST; length=874bp
CCACGCGTCCGAGTTAAGGTAGAAGAATGAGGAGGCACCAGTGGCTTCCT
CAAGGATCTCATCGACCAGCGTTGCCACCGCTAACCGCACCATGCCTAGC
TCACGACGTCATAGGTCACCCCCGTCGCCGGTCTCAAGACTTCTTCTGAT
TTCCCAGCAACCGAGAATACCAACGATGACATTACTTCCATTGCAAGCAA
CAGCGGAATAGTCCAATGCATGAAGGAGCGGCCACCAGCTGAGCTTGAAT
AACTGCGAGACTCTCTCATACCTCCCGCCACTGATCCGATGAAGCTTTGC
TCATTCGAAATCAGATACCTTCTCCGCTCCCGCTGGATTCCCTGCGTGTA
ATACATGGCGAAGAAAGGATGGCTGCACCATGATGACCACGGCTCACCAG
AATACTACGATCGTGACGCTACTGGACAAAGTGGAATCTGCACCATGTAT
GGGAGCAATGATGCAACCCACGAAACGACAGATGTTGTTGATGACCAGAA
TGAATACACACATACTTCTCACCCCAAATATCTGATCTGACAACAGAGAG
TAAGTGCGCTAGCATCAATGCCTAGCTGCATGCCAGCAAGCGTCTAGGTT
CCCTATAATATCTGAGCCACCACCCATGCAAGATATGTGATTATTATTAC
GCGAAACACGCATAATGATCATACCATCGATGGTTGATTCAGTGTGCGCA
TGATGATGACTAAGCTGCTGCTGCTGATGCTCACACTCATTAGATATGCT
CACCGACTTGGCTATCCTTTCTTAATATCNNATAGTAGTGGAAACATTCG
TCTCACTATCATCATCTGGGTCGCGGCTGATCAAGCTAGTGACGTGATTA
CTGCTGAAATATCAAGATACTCTT
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