EY692965

Overview
NameEY692965
Unique NameEY692965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692965 vs. ExPASy Swiss-Prot
Match: GCP3_XENLA (Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.044e-14
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3
Query:   30 HLLDVIYKIYKF*EHWLAI*LYLLLGESDFGHNLMDIGGPKLSDPANTINSYKLAGLLET 209
            +LLDV+ K Y   EH  A+  YLLLG+ DF  +LMD+  P+L  PA T+  + L G+LET
Sbjct:  543 YLLDVLNKNYNLLEHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILET 602          

HSP 2 Score: 36.1946 bits (82), Expect = 4.044e-14
Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  296 GDTGCYVFSLQYYARVPLDTLIPHPVIATYIKIFNF 403
            GDTG  VFSL Y+   P+ T+     ++ Y+++FNF
Sbjct:  630 GDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNF 665          

HSP 3 Score: 26.5646 bits (57), Expect = 4.044e-14
Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  211 AIRTSNAQYDDPDILDHVE 267
            A+R +NAQ+D+P+IL  ++
Sbjct:  603 AVRATNAQFDNPEILKRLD 621          
BLAST of EY692965 vs. ExPASy Swiss-Prot
Match: GCP3_MOUSE (Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 5.230e-14
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3
Query:   30 HLLDVIYKIYKF*EHWLAI*LYLLLGESDFGHNLMDIGGPKLSDPANTINSYKLAGLLET 209
            +LLDV+ K Y   EH  A+  YLLLG+ DF  +LMD+  P+L  PA T+  + L G+LET
Sbjct:  542 YLLDVLNKKYSLLEHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILET 601          

HSP 2 Score: 36.1946 bits (82), Expect = 5.230e-14
Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  296 GDTGCYVFSLQYYARVPLDTLIPHPVIATYIKIFNF 403
            GDTG  VFSL Y+   P+ T+     ++ Y+++FNF
Sbjct:  629 GDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNF 664          

HSP 3 Score: 26.1794 bits (56), Expect = 5.230e-14
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  211 AIRTSNAQYDDPDILDHVE 267
            A+R +NAQ+D P+IL  ++
Sbjct:  602 AVRATNAQFDSPEILKRLD 620          
BLAST of EY692965 vs. ExPASy Swiss-Prot
Match: GCP3_HUMAN (Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 1.462e-13
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 3
Query:   30 HLLDVIYKIYKF*EHWLAI*LYLLLGESDFGHNLMDIGGPKLSDPANTINSYKLAGLLET 209
            +LLDV+ K Y   +H  A+  YLLLG+ DF  +LMD+  P+L  PA T+  + L G+LET
Sbjct:  544 YLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILET 603          

HSP 2 Score: 36.1946 bits (82), Expect = 1.462e-13
Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  296 GDTGCYVFSLQYYARVPLDTLIPHPVIATYIKIFNF 403
            GDTG  VFSL Y+   P+ T+     ++ Y+++FNF
Sbjct:  631 GDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNF 666          

HSP 3 Score: 25.7942 bits (55), Expect = 1.462e-13
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  211 AIRTSNAQYDDPDILDHVE 267
            A+R +NAQ+D P+IL  ++
Sbjct:  604 AVRATNAQFDSPEILRRLD 622          
The following BLAST results are available for this feature:
BLAST of EY692965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GCP3_XENLA4.044e-1448.33Gamma-tubulin complex component 3 homolog OS=Xenop... [more]
GCP3_MOUSE5.230e-1448.33Gamma-tubulin complex component 3 OS=Mus musculus ... [more]
GCP3_HUMAN1.462e-1346.67Gamma-tubulin complex component 3 OS=Homo sapiens ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-C12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692965 ID=EY692965; Name=EY692965; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGAGCAAATAGATTGATATGCATCTGCTGGATGTTATTTAT
AAAATATATAAGTTCTAAGAACATTGGCTTGCAATCTAGCTATATTTACT
GCTTGGGGAAAGTGATTTTGGTCACAATCTCATGGATATTGGGGGCCCAA
AACTTTCAGATCCTGCTAATACTATCAACTCTTACAAGCTTGCTGGATTG
CTGGAAACGCGCAATTCGGACATCTAATGCTCAGTATGATGATCCTGATA
TATTGGATCATGTTGAGGGTATAATTGATGCCACACTCGGTCACTGGTGA
TACGGGTTGCTATGTATTCTCATTGCAATATTATGCTAGAGTACCATTGG
ATACATTGATCCCCCACCCTGTTATCGCTACATATATTAAGATCTTTAAC
TTTGCTATGGAATCTCACACCGGTGGAGCACGCACTTATTGGGGCTTGGA
AGGTCATGCAACCAAACTGCTTCACTTCTAATTCCTTCACTACTCTGACA
CCTGCTGGTCATCTGCTATTGCTTTCTACACTGACGCGTTACCAGGATCT
TTAGGATGATATGAATCCTTCTGTCCAAATCCGCATATTATATTATGGAC
CACGTCTCCGATGTGACTTGGACTAATTTCTCCATGAAGTGGAAGCTGCC
ACACATCTAGACGATCTACCTGCAACGCATGATGAGTACCTCCACTCTAT
ATATGAGAACGCTCGTCTTGGAGAACGATCTCATCGCATCTCATGGCTCT
CTATAGCGTGCTTGACCACTATTGCGATGCNAGAGCACGCCATGCGTCAT
ATGAAGAATTCATGAGCTGCATCTAGAACATGNCATCTCTGTATCTCGCT
TACACACAAATCGGTGTGCTACTTATGTTGCACCCAAACTGTTCATGGTC
ATGATGCAGGAAGCCTAACCACGTGCGGTCATTAC
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