EY692962

Overview
NameEY692962
Unique NameEY692962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692962_ssr20 microsatellite EY692962_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692962 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 72/196 (36.73%), Postives = 90/196 (45.92%), Query Frame = 1
Query:  127 MATCGTTPSSLMLTYAATPVHPQDXXXXXXXXXXXXXXXAAFSLCTNLIVIGGERRASKWLDLYPLIQNKNGLPGHMLAAASAVEPDTDLATDDEEDYXXXXXXXXXXXXXXXISTXXXXXXXXXXXXRDRTRSKRFLEIQHLTARKKEYDLLTAISLL*QMSSTQLTATAEAHCRLDIDPTYDDQQLTATGVYPR 714
            MAT    P SL L YA++    Q                   SLC  L +   ER   KW+D     Q+   +   +LAA +A     D+  ++ E                   T             DRTRSKRFLEIQ L   K+EYDL TA+SL+ QMSST+   TAEAH RL+IDP Y+DQQL AT   P+
Sbjct:    1 MATAA--PPSLSLCYASSSFQYQQDPSFQTHFKPLLLNS---SLC-RLTLNQRERSCLKWVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGES---------GGVATLPSPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPK 181          
BLAST of EY692962 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.116e-16
Identity = 71/197 (36.04%), Postives = 87/197 (44.16%), Query Frame = 1
Query:  127 MATCGTTPSSLMLTYAATPVHPQDXXXXXXXXXXXXXXXAAFSLCTNLIVIGGER-RASKWLDLYPLIQNKNGLPGHMLAAASAVEPDTDLATDDEEDYXXXXXXXXXXXXXXXISTXXXXXXXXXXXXRDRTRSKRFLEIQHLTARKKEYDLLTAISLL*QMSSTQLTATAEAHCRLDIDPTYDDQQLTATGVYPR 714
            MA C T  SSLML YAA     QD                  S    L+++GG R R    +D               + +A A E D D   D E+                 +              RDRTRSKRFLEIQ L   KKEYD+ TAISLL Q ++T+   + EAH RL+IDP Y+DQQL AT   P+
Sbjct:    1 MAACATH-SSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSF--PLLLLGGSRDRRCAAID--------RASNHKFIVSAVAAEADLDTEEDLEQTATAVLDPPKPKKGKAAL-----------VLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPK 175          
BLAST of EY692962 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  514 DRTRSKRFLEIQHLTARKKEYDLLTAISLL*QMSSTQLTATAEAHCRLDIDPTYDDQQLTATGVYPR 714
            DR RSKRFLEIQ L   KKEYDL TAISL+ + + T+   T EAH RL+IDP Y+DQQL AT   P+
Sbjct:   53 DRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPK 119          
The following BLAST results are available for this feature:
BLAST of EY692962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK1_SPIOL7.416e-1836.7350S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_ARATH3.116e-1636.0450S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_PEA3.809e-1461.1950S ribosomal protein L1, chloroplastic (Fragment)... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-C08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692962 ID=EY692962; Name=EY692962; organism=Citrus sinensis; type=EST; length=843bp
CCACGCGTCCGCGCTCTTATCTTCTTCTTCTGGGACTTTTTTTCTGGGTA
GGTATAGCAATTTGCAATAGCAGTGCATATATACAAATTACATAACTCAA
AAAGGTTCCAATACTGTATCCGCAAAATGGCGACATGTGGCACTACTCCG
TCGTCTCTGATGCTAACATACGCCGCCACGCCGGTACACCCGCAAGACTT
GACACCCTCGCTGTCTCTTCTTTCTTTCAAACCCTCGAAGACTGCGGCTT
TCTCACTGTGCACCAACCTCATCGTTATAGGAGGGGAGAGGAGGGCCAGC
AAGTGGCTTGATTTGTATCCGCTGATACAGAACAAAAATGGGCTTCCTGG
ACACATGCTGGCGGCTGCTTCTGCTGTCGAACCTGATACTGACTTGGCCA
CTGACGATGAGGAGGACTATACTCAGGGAGGTACTGAAGGAGCAACTGCT
ACTGCTACTGCTACTATTTCAACTAAGCCTAAGAAAGGCAAGGCTGCGTT
GCCTCTCAAGAGAGACAGGACTAGGTCTAAAAGATTCCTGGAAATTCAAC
ATTTGACGGCACGCAAGAAAGAGTATGATTTGCTGACGGCGATATCTCTG
CTGTAGCAGATGTCGAGTACTCAGCTCACGGCAACAGCTGAAGCCCATTG
TCGCCTCGACATTGATCCCACATACGATGATCAACAGCTTACAGCAACTG
GAGTTTACCCAAGGCAACTGCATATCTGCTAAGGTGGCTGTTCTTGCTCT
ACGTGACAATGTCATGATGCAAACATGCACGACAGAATTGGCTGGTGTGA
TGACTCGATTGACAGATAAAGGAGGATTCTGTAGCTCGACATC
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