EY692954

Overview
NameEY692954
Unique NameEY692954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692954 vs. ExPASy Swiss-Prot
Match: DPOE1_DICDI (DNA polymerase epsilon catalytic subunit A OS=Dictyostelium discoideum GN=pole PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.002e-17
Identity = 29/108 (26.85%), Postives = 53/108 (49.07%), Query Frame = 1
Query:  433 RELFEWIELEPVHFWHSLLFMDQYNYGGI-------------PARADESLDDDSQVD-----------------------IVSSWNIAEYLPKEIQDHFVLVVSEFMY 648
            +ELF WI  +  +++H+LL+++  NY GI               +  ++ DDD   D                       I+++WNIAE+LP +IQ  F++++S+++Y
Sbjct: 1927 KELFSWINFKQTNYYHNLLWLNNSNYSGILYFNPLINKNQQQQQQQQDNADDDDDDDVSENEEEQQQNKNKKLKKIKNGKIITNWNIAEFLPPQIQTSFIIIISDYIY 2034          

HSP 2 Score: 52.7582 bits (125), Expect = 2.002e-17
Identity = 22/54 (40.74%), Postives = 40/54 (74.07%), Query Frame = 3
Query:  195 VMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTR 356
            +M+KVF  L+ EF+KLG+ I++ANF+K+II + K  +  A++YC+ +L  ++ +
Sbjct: 1874 LMKKVFIQLIFEFKKLGSKIVYANFNKIIICSQKDSIEDARSYCNYILAVIKKK 1927          
BLAST of EY692954 vs. ExPASy Swiss-Prot
Match: DPOE_USTMA (DNA polymerase epsilon catalytic subunit A OS=Ustilago maydis GN=POL2 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.326e-15
Identity = 29/95 (30.53%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  433 RELFEWIELEPVHFWHSLLFMDQYNYGGIPARADESL---DDDSQ----------VDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLA 678
            RELF+ ++L+ +H+W  LL+MD  N+GG+ A  D  +   D+ +Q           ++  +WNI  +LP  +Q+ F + V  F+Y  +++ ++ A
Sbjct: 1906 RELFKHVQLDIIHYWEYLLWMDTANFGGVIADTDSLVAPTDEQAQEASAANQVATFNVEMNWNIQTFLPLAVQEKFSVAVGSFIYSLYEYKRRAA 2000          

HSP 2 Score: 45.0542 bits (105), Expect = 1.326e-15
Identity = 22/54 (40.74%), Postives = 37/54 (68.52%), Query Frame = 3
Query:  195 VMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTR 356
            +M+K    LLAEF++LGA+I++A+F+++ + T K   + A AY   LL A+ +R
Sbjct: 1853 LMKKTLLQLLAEFKRLGASIVYASFNRLFLLTSKPTAANAMAYSRYLLTAVTSR 1906          
BLAST of EY692954 vs. ExPASy Swiss-Prot
Match: DPOE_SCHPO (DNA polymerase epsilon catalytic subunit A OS=Schizosaccharomyces pombe GN=pol2 PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 5.439e-13
Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 1
Query:  439 LFEWIELEPVHFWHSLLFMDQYNYGGIPARADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASL 696
            LF +++L    +W  LL+MD  NYGG    A+ S  ++    +V SW+I  +LP  IQ  F   + EF+   +K  QKL  S   +
Sbjct: 1860 LFHFLDLNVTEYWDYLLWMDSVNYGGKMVAANFSATNEEPQTVV-SWHIKSHLPPIIQPEFQSWIVEFIEEVYK--QKLEKSNTKV 1942          

HSP 2 Score: 46.2098 bits (108), Expect = 5.439e-13
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 3
Query:  195 VMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQT 353
            +M+K F  LL+E ++LGA II A+ +K++I T K  +  A  Y + LLK+++T
Sbjct: 1805 IMRKTFLQLLSEIKRLGAHIIHASANKILIKTSKLIVQNAVTYSNYLLKSIKT 1857          
BLAST of EY692954 vs. ExPASy Swiss-Prot
Match: DPOE_CRYNE (DNA polymerase epsilon catalytic subunit A OS=Cryptococcus neoformans GN=POL2 PE=3 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 7.718e-11
Identity = 20/54 (37.04%), Postives = 35/54 (64.81%), Query Frame = 3
Query:  195 VMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTR 356
            +M+K F  LLAEF++LG  +++A+F +V + T K D  +A A+   L+ A  ++
Sbjct: 1836 LMRKTFLQLLAEFKRLGTQVVYADFGRVFLLTSKPDAGSAFAFAKYLVAAANSQ 1889          

HSP 2 Score: 43.8986 bits (102), Expect = 7.718e-11
Identity = 23/75 (30.67%), Postives = 38/75 (50.67%), Query Frame = 1
Query:  433 RELFEWIELEPVHFWHSLLFMDQYNYGGI---PARADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMY 648
            +ELF  + ++   FW+ L +MD  N+GG+   P  A        + +I   WNI  +LP  +Q  F   V+ F++
Sbjct: 1889 QELFRHLIIDVAQFWNYLAWMDVANFGGVKVSPETAASREPPAKRFEISMDWNIQSFLPGTLQPVFERNVASFIF 1963          
The following BLAST results are available for this feature:
BLAST of EY692954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DPOE1_DICDI2.002e-1726.85DNA polymerase epsilon catalytic subunit A OS=Dict... [more]
DPOE_USTMA1.326e-1530.53DNA polymerase epsilon catalytic subunit A OS=Usti... [more]
DPOE_SCHPO5.439e-1334.88DNA polymerase epsilon catalytic subunit A OS=Schi... [more]
DPOE_CRYNE7.718e-1137.04DNA polymerase epsilon catalytic subunit A OS=Cryp... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-B12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692954 ID=EY692954; Name=EY692954; organism=Citrus sinensis; type=EST; length=938bp
TCTTGTTTAAACCATTTTAATCCTTGCGTGATGTTTTTTTTTTTGGTTGG
TTGAGCAACTTATCGTAATAAATAAGGTTCTTTACTCAAAAATAGTTCAT
CAAAATTATGTTATTATTATATTGCCACATGATTTCATAACTTAAAATAT
TACTTTCTGTTTTCCCTTTTGAATTCTTTTATTAACCATCATAGGTCATG
CAAAAGGTGTTTGCAATGTTGTTGGCTGAGTTTCGCAAATTAGGTGCCAC
AATAATATTTGCAAATTTCTCGAAGGTAATTATAGACACAGGAAAATTCG
ATCTGTCTGCTGCTAAAGCTTATTGTGATAGCTTGCTGAAAGCTCTGCAA
ACTAGGTAGATCTTGTACCAGAATTTGTTAGATCGTTTCAATTTTTTTTT
TCTTTTCTGTAATTTCATTTTTGCCTCTTTGCAGAGAACTGTTCGAGTGG
ATTGAGCTTGAGCCAGTGCACTTCTGGCATTCCTTGCTTTTTATGGATCA
GTATAACTATGGTGGAATCCCTGCTCGAGCTGACGAAAGTTTAGATGATG
ACTCACAAGTGGATATTGTTTCAAGTTGGAATATTGCTGAATACTTGCCC
AAGGAAATTCAAGATCATTTTGTTTTAGTTGTCTCTGAGTTTATGTATAT
TCCTTGGAAGCATGCACAAAAGCTAGCAGCAAGTAGAGCATCTTTGCAAG
AAGGCAGCTCATGCACTCCCTTCATCACTGTTGCAGCTGCAGAGAACTTT
GAGTCCACATAGTGCAATATGTTAAAGGGGAGTCAGCTCTTATTCACTGG
AAAAACTCTAGTATGNTCGTGATGCTATTCATCTATGAAGAAATGAACAT
GATCGCATAACTCACCTNGGGTATGCAACTGCTGCAACATCCACAAGTGA
TGCTCCATTGGAGTCATANCATGTTGTGCTGCTTTGCT
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