EY692946

Overview
NameEY692946
Unique NameEY692946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY692946 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.875e-51
Identity = 87/136 (63.97%), Postives = 106/136 (77.94%), Query Frame = 1 
Query:  289 RPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFXNGTL 696
            R HS S+ +FG VGDG TLNTKAFQ+A+  L+ +  +GGA+L+VPAG+WLTGSF L SH TL+L +DAV+L S +   WPVI PLPSYGRGR+   GR+ SLIFG NLTDV+ITGDNGTIDGQG +WW+ F  G L
Sbjct:   59 RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKL 194

HSP 2 Score: 32.7278 bits (73), Expect = 4.875e-51
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 3 
Query:  699 FTRPHLXELMNSTGVIISNLTXXNPP 776
            +TRP+L ELM S  + ISNLT  N P
Sbjct:  196 YTRPYLIELMYSADIQISNLTLLNSP 221
The following BLAST results are available for this feature:
BLAST of EY692946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI4.875e-5163.97Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-B04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692946 ID=EY692946; Name=EY692946; organism=Citrus sinensis; type=EST; length=930bp
CCACGCGTCCGCCCACGCGTCCGAGCAGAACCTTTCTCTTTCTTTCTATC
TATCTTTGTTCATTAAGATCCAAGTATCAGTTGGTGACTATCTCTGCTTG
CTCGTGTCAAGCAAGTGTTAAAAAGCTTTGCTAAGGCGCTTGGGCTCTAG
AGCAAAGCAGCAGATCCCATTCATATGAGGAGATCTTTTACTCTGGTGGA
TGTGTTTCTGGTACTTGCATTATTTAGTGAAGCTCCATGGGCTGTCGCGG
GCAGCTCACAATGTAGTCAAAGCAATTTAGAGGTATTTCGGCCTCATAGT
GTCTCTATCACTGAATTTGGAGCTGTCGGAGATGGTGTCACTCTAAACAC
CAAAGCCTTTCAGAATGCAATCTTCTATCTCAATTCATTTGCAGATAAGG
GTGGGGCCAAGCTTTTTGTCCCAGCTGGCCAGTGGTTGACAGGTAGCTTC
GATCTCATCAGTCATCTAACTTTGTGGTTAGACAAGGATGCAGTAATTCT
TGGATCCACGAACTCGGACACTTGGCCGGTTATTGATCCTCTACCATCAT
ATGGCAGAGGTAGGGAGTTGCCTGGTGGAAGGCATCGGAGCCTCATTTTT
GGACGCAATTTGACAGATGTGGTCATAACAGGTGATAATGGAACTATTGA
TGGTCAAGGCAGCATCTGGTGGGAATGGTTTCNAAATGGAACACTGGATT
CACCCGACCTCATCTGGNTGAATTGATGAACTCGACTGGGGTTATCATCT
CAAATTTGACCTTNNCTAATCCACCATTTGGACATCCANTCTGTATACTG
CAGCCATGNTTAAGTGCAGAATGGTCACATCCGTGCCCACTTTGATCACC
AACACAGATGGATTGATCCAGACTCTCTGACGTGTCTGCATTAAGACTGT
AANTAGCACGGGGATGACTGGTTCCATCAA
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