EY692944

Overview
NameEY692944
Unique NameEY692944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY692944 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.152e-15
Identity = 53/140 (37.86%), Postives = 71/140 (50.71%), Query Frame = 2 
Query:  344 AQNGEVRTSDSESDRDEPGPTRASAVEYXXXXXXXXXXXXXXKAKQDLLMKRRAAVLAVPTNDMAVRARLRRLGEPITFFGD-ERWKAGQAADAYAKLDSEGQXXXXXXXXXXXXXXXTATGADXXEKMLQYPFYTEGSR 760
            +QNG V+TSDS+S+ D+                         KA QDLL+KRRAA +AVPTND AVR RLRRLGEPIT FG+ E  +  +      + D  GQ                    +  +++L+YPF+TEG +
Sbjct:   69 SQNGGVKTSDSDSESDDE--------HIEISEESKQVRERQEKALQDLLVKRRAAAMAVPTNDKAVRDRLRRLGEPITLFGEQEMERRARLTQLLTRYDINGQ----LDKLVKDHEEDVTPKEEVDDEVLEYPFFTEGPK 196
The following BLAST results are available for this feature:
BLAST of EY692944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRP4_ARATH3.152e-1537.86U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-B02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692944 ID=EY692944; Name=EY692944; organism=Citrus sinensis; type=EST; length=947bp
CCACGCGTCCGCTCAAATTACCAGAAAACGAACCAGTGAAGTGAACATCC
GTTCGTCTTCTATTGTCACAGTTTAAGGTCTCATGGCGGCTGAAGAGGAA
AACCCGGTATCAACTTCACTGCCAGTGTCTTCCGCTGCTGTCCCTGATAG
TCAAGCACTGATATCTACAATTGAAGCAACTCCATCTCAACCGGTTCAGC
CTATTATCCCACCAGTTATCCCACCTATGGTTTCGGCAGTTGTGCCTCCT
ATTGCTCCGATATCCACAATTCCACCTCCTCAAGTTCCTGCTCCATTAGC
ACCACTTCCTGTACGCCCCCCGGTGTTTAAGCCTCCAGTGCCAGCACAGA
ATGGTGAGGTCAGAACTAGTGACTCTGAGTCTGACCGTGATGAACCTGGG
CCAACCCGGGCTTCTGCAGTTGAATATGAGATTTCAGAAGAGAGCAGACA
GGTGAGGGAGCGACAGGAAAAGGCAAAGCAAGATCTGCTTATGAAACGGC
GTGCTGCTGTGCTAGCAGTGCCCACTAATGATATGGCTGTCCGTGCTCGA
CTTCGTCGGCTTGGAGAGCCCATAACATTTTTTGGAGACGAGAGATGGAA
GGCGGGACAGGCTGCGGATGCTTATGCAAAGCTCGATTCTGAAGGGCAGT
TANATAGGCTGATGAAAGCTCTTTTGAGGAGGAGAGCTGCTGCAACTGCT
ACTGGGGCAGATGNTGANGAAAAAATGCTCCAGTACCCCTTCTATACTGA
GGGGTCAAGGCTCTNCTGGATGCCAGATAGATATTGCTANTATTCTATTG
CGAAGCAGCAAAGCGCCTACACAGCACAGAGAGAGGGATAATCCGATGAT
CTATGATGATGAATGATACCGTCTAAAAAGGGGAGAGTTTGACCTCATGT
ACGGAATCTGGGAGATCGGCCACTCCTGGTGTCCTACTCCTGATGGA
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