EY692940

Overview
NameEY692940
Unique NameEY692940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4879 contig Csv1_Contig4879:534..1411. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TIM17_ARATH (Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 6.433e-60
Identity = 111/143 (77.62%), Postives = 120/143 (83.92%), Query Frame = 1
Query:   37 MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNM 465
            MGTPETSREPCPDRILDD               HF+KG YNSP G+R +GGTQ+V MNAPR GGSFAVWGGLFSTFDC+MVYLRQKEDPWNSI AGAATGGFLSMRQG GA++RSA+FGGVLLALIEGAGIMLNKVL+ PQNM
Sbjct:    1 MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLALIEGAGIMLNKVLAQPQNM 143          
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TI17A_MOUSE (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Mus musculus GN=Timm17a PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.675e-32
Identity = 76/144 (52.78%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   49 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLS-----GPQ 459
            E +REPCP RI+DD                  KG  NSP G   RL G   A++  AP++GGSFAVWGGLFST DCSMV +R KEDPWNSI +GA TG  L+ R G  A   SA  GG+LLALIEGAGI+L +  S     GPQ
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQFPNGPQ 146          
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TI17A_RAT (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Rattus norvegicus GN=Timm17a PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.264e-31
Identity = 75/144 (52.08%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   49 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLS-----GPQ 459
            E +REPCP RI+DD                  KG  NSP G   RL G   A++  AP++GGSFAVWGGLFST DC MV +R KEDPWNSI +GA TG  L+ R G  A   SA  GG+LLALIEGAGI+L +  S     GPQ
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQFPNGPQ 146          
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TI17A_HUMAN (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.651e-31
Identity = 75/144 (52.08%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   49 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLS-----GPQ 459
            E +REPCP RI+DD                 +KG  NSP G   RL G   A++  AP++GGSFAVWGGLFS  DCSMV +R KEDPWNSI +GA TG  L+ R G  A   SA  GG+LLALIEGAGI+L +  S     GPQ
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQFPNGPQ 146          
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TI17B_HUMAN (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.816e-31
Identity = 71/133 (53.38%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   49 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTR--LLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNK 441
            E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  A   SA+ GG+LLALIEG GI+L +
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTR 135          
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TI17B_MOUSE (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.194e-31
Identity = 70/133 (52.63%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   49 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTR--LLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNK 441
            E +REPCP RI+DD                 +KG  N+P G R    G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  A   SA+ GG+LLALIEG GI+L +
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTR 135          
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TI17B_BOVIN (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.114e-30
Identity = 70/133 (52.63%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   49 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTR--LLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNK 441
            E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R    A   SA+ GG+LLALIEG GI+L +
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSVPLAMVGSAMMGGILLALIEGVGILLTR 135          
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TI17C_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.183e-29
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   49 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPIMI 477
            E +R+PCP RI++D                FLKG  N+P+G   RL GG   V+M  P + GSFAVWG  FST DC++V+ RQ+ED WNSI +GAATGG L+ R G+ A A SA+ G ++LA+IEGAG  +  + +  +   I+I
Sbjct:    2 EYNRQPCPIRIVEDCGCAFMMGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSIAGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGIRAMANSALVGCLVLAMIEGAGAAVATINAADKGAGIVI 146          
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TI17A_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.183e-29
Identity = 67/132 (50.76%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   49 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLN 438
            E  REPCP RI++D                 +KG  N+PSG   RL GG  AVR  +  VGG+FAVWG  FS  DCS+VY R+KEDPWN+I +GA TGG L+ R GL +   SA+ GG LLALIEG GI+++
Sbjct:    3 EYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGALLALIEGVGIVVS 134          
BLAST of EY692940 vs. ExPASy Swiss-Prot
Match: TIM17_NEUCR (Mitochondrial import inner membrane translocase subunit tim-17 OS=Neurospora crassa GN=tim-17 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.232e-28
Identity = 66/134 (49.25%), Postives = 84/134 (62.69%), Query Frame = 1
Query:   55 SREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLR-QKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSG 453
            +R+PCP  IL+D               H +KG  NSP G R +G   A++M AP +GG+F VWGGLFSTFDC++  LR  KEDPWNSI AG  TGG L++R G  A+   A+   VLLA+IEG GI   K+L+G
Sbjct:    4 TRDPCPWVILNDFGGAFAMGAIGGTIWHGIKGFRNSPYGERRIGAITAIKMRAPALGGNFGVWGGLFSTFDCAIKGLRNHKEDPWNSILAGFFTGGALAVRGGYKAARNGAIGCAVLLAVIEGVGIGFQKMLAG 137          
The following BLAST results are available for this feature:
BLAST of EY692940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM17_ARATH6.433e-6077.62Mitochondrial import inner membrane translocase su... [more]
TI17A_MOUSE5.675e-3252.78Mitochondrial import inner membrane translocase su... [more]
TI17A_RAT1.264e-3152.08Mitochondrial import inner membrane translocase su... [more]
TI17A_HUMAN1.651e-3152.08Mitochondrial import inner membrane translocase su... [more]
TI17B_HUMAN2.816e-3153.38Mitochondrial import inner membrane translocase su... [more]
TI17B_MOUSE8.194e-3152.63Mitochondrial import inner membrane translocase su... [more]
TI17B_BOVIN3.114e-3052.63Mitochondrial import inner membrane translocase su... [more]
TI17C_DROME1.183e-2945.52Probable mitochondrial import inner membrane trans... [more]
TI17A_DROME1.183e-2950.76Probable mitochondrial import inner membrane trans... [more]
TIM17_NEUCR2.232e-2849.25Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-A10-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692940 ID=EY692940; Name=EY692940; organism=Citrus sinensis; type=EST; length=879bp
CCACGCGTCCGAAAAAAGAAAAAGTCTCCGTCTTAGATGGGAACTCCTGA
GACGTCCCGCGAACCCTGCCCCGACCGGATCCTCGACGACGTCGGCGGCG
CGTTCGGCATGGGCGCCGTTGGCGGCTCGGCTTTTCACTTTCTCAAGGGC
ATCTACAACTCACCCAGCGGCACCCGCCTCCTCGGCGGCACCCAAGCCGT
CCGTATGAACGCGCCCCGCGTCGGCGGAAGCTTCGCAGTGTGGGGCGGCC
TTTTTTCGACCTTCGACTGCTCCATGGTCTACCTCCGCCAGAAAGAGGAC
CCCTGGAACTCCATCTTCGCCGGCGCCGCCACAGGTGGCTTTCTCTCCAT
GCGCCAGGGTCTTGGCGCCTCGGCTCGATCCGCTGTATTTGGTGGCGTTC
TCTTAGCTTTAATAGAAGGAGCAGGGATCATGCTCAATAAAGTCCTCAGC
GGGCCGCAGAATATGCCGATTATGATTGATGAGCCGGAGCCGGTTCCCGG
GATGGTTGGTGGTGGGCCTCCCGGTATTCCTGCTGGCTTGCCGGGGAATC
CCGTACAGGTAGCAGAATCAGGTTCTTCAGATTCCGATTCCAGTTGGTTC
GGGGGGTGGTTTGGTGGAGGTCAAAAGAAAGAACCGGNCACTAGCGGTGG
AAGCAAGACNGAGATTTTTGGAGAGTTTTGATGCGCCTCCGGTGCCCTCT
TTTGAGTACNAGTGAATCGAAACATGAGGGCAGAGGATTCTGGGGGTGTG
GGGAATGAAGGACCCTGNTCCAGGTTGTGGCACAGGCTTTTTGGGTACCA
TGGATTTACATTTTCCTGTCTACCCAATAAAAGGCTCGCAGGTTTGTTAG
TGTGCATTTAAATGTCGCCATAAATATCA
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