EY692926

Overview
NameEY692926
Unique NameEY692926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692926 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.024e-23
Identity = 82/223 (36.77%), Postives = 117/223 (52.47%), Query Frame = 2
Query:  296 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDL-DPPPN---YQPKANYRC-------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTV-PESDYVDKGGTT----X*IQXSGSENLNGVSFAVKTAEVGYXKCECMXG*CQGAFTAXTG*FXVKSFLAEPRSI 916
            MA+RVT  +S YVA+++A SAG R G  T   RS  E   RPR   H++  D+ D  P    + P +  R        +T+A EI  +G C SP+++G++SLM  T     P  + M   GISPFK +S+IPFL+GSKW+PC+ P T+  +   VD+GG        ++ S   +  G  +  K   +      C     + AFTA T     +S LAEP+SI
Sbjct:    1 MAIRVTFTYSSYVARSIASSAGTRVG--TGDVRSCFETWVRPRFCGHNQIPDIVDKSPGSNTWGPSSGPRARPASSMYSTIAREILEEG-CKSPLVLGMISLMNLTGA---PQFSGMTGLGISPFKTSSVIPFLRGSKWMPCSIPATLSTDIAEVDRGGKVCDPKVKLELSDKVSNGGNGWVNKLLNI------CSED-AKAAFTAVTVSLLFRSALAEPKSI 210          
BLAST of EY692926 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.964e-23
Identity = 81/207 (39.13%), Postives = 108/207 (52.17%), Query Frame = 2
Query:  296 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTX*IQXSGSENLNGVSFAVKTAEVGYXKCECMXG*CQGAFTAXTG*FXVKSFLAEPRSI 916
            MA+R+T  +S +VA+NL    G R G          E L RPR F H  K D D  P  +P + Y   ++A E+ G+G+  SP++MGL+S++KST G     +++M V G+S FKA+SIIPFLQGSKW+        P  D VDKGGT             G  +  K   V      C     + AFTA T     +S LAEP+SI
Sbjct:    1 MAIRITFTYSTHVARNLV---GTRVGPGGYC----FESLVRPRFFSH--KRDFDRSPRNRPASMY--GSIARELIGEGS-QSPLVMGLISILKSTTGH---ESSTMNVLGVSSFKASSIIPFLQGSKWIK-----NPPVIDDVDKGGTVCDDDDDKESRNGGSGWVNKLLSV------CSED-AKAAFTAVTVSILFRSALAEPKSI 180          
The following BLAST results are available for this feature:
BLAST of EY692926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TPP2_ARATH4.024e-2336.77Probable thylakoidal processing peptidase 2, chlor... [more]
TPP1_ARATH8.964e-2339.13Thylakoidal processing peptidase 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-H08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692926 ID=EY692926; Name=EY692926; organism=Citrus sinensis; type=EST; length=934bp
CCACGCGTCCGTGGGCATTTGGTTTCGAGTGTAGCTCCATCTCTCTGCCT
CCCAGAGAGAAGCAAAGCATAAAACAAAAGCTCGTAAATTTGAGCGCTGA
TTTTCTCCAAAAAGCAGTCTCACATCGGCATCCGGTTTTACACTCTAAGC
CTCAATTCAACCTTTCCGCTTCCGACTCACTGAATCAGCCCGTGACGATG
TCGTTTATCAGCTTCTAGATCTCCTCCGATCAACCCTTTTAATCTCCGAA
AGCGCAATTCAACTAATCCTCCTCAAGCTATTCAAAATCGCAAACATGGC
GTTACGTGTCACCGTCAACTTCTCCGGTTACGTCGCTCAAAACCTCGCCC
ACTCCGCCGGAATCCGCTTCGGCTTCTCCACCACCTCCACTCGCTCCTTC
CACGAATGCTTGTTTCGCCCTCGAGTCTTCTGCCATAGCAAAAAAACCGA
CCTTGATCCGCCCCCAAATTACCAGCCCAAAGCAAATTACCGATGTAACA
CACTCGCCGCCGAAATATTCGGTGACGGCGCTTGCAACAGTCCGATCCTG
ATGGGATTGGTCTCGTTGATGAAGTCAACGGCTGGTATGCCCGGTCCTTC
GGCAACCTCCATGGGTGTCTTTGGGATTTCACCGTTTAAAGCCGCTTCGA
TTATTCCCTTTCTACAGGGATCGAAGTGGCTTCCCTGTAACGAGCCGGGC
ACCGTTCCGGAGAGTGATTACGTGGATAAAGGAGGGACTACTGANTAAAT
ACAGNNTAGTGGGAGTGAAAATCTGAATGGTGTAAGCTTTGCAGTGAAAA
CAGCGGAAGTTGGTTATCNAAAGTGTGAATGTATGNTCGGATGATGCCAA
GGCGCCTTTACNGCTTNGACTGGTTAGTTCNTGGTCAAGTCGTTTTTGGC
TGAGCCCAGATCCATTCATCGGCTTCATGAACCC
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