EY692916

Overview
NameEY692916
Unique NameEY692916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY692916 vs. ExPASy Swiss-Prot
Match: CCX3_ARATH (Cation/calcium exchanger 3 OS=Arabidopsis thaliana GN=CCX3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.619e-11
Identity = 47/161 (29.19%), Postives = 71/161 (44.10%), Query Frame = 2 
Query:  326 CSSLEAQP--SDGALFNYLSLHFCHFNNHPXXXXXXXXXXXXXXXXXXXKTAQSHFSLVTTKLSSMLNLSPSMAAVTLLALGNGSPDVFSSVQA-LRSGHYRTGFGAILXXXXXXXXXXXXXXXIYAA--PFSVDAGCFVRDVGFYLVAALFVFMCT*VGR 793
            C  L+A P  S    F+YLS  +C   +                      TA  +F     KLS +L L P++A VTLL LGNG+PDVF+S+ A + +     G  ++L               +  A     +D  CF+RD+ F+L + + + +   VGR
Sbjct:  105 CEFLKANPICSPDGFFDYLSFFYCSCRDFSILGYMMLGVWLVALFYLLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFASIAAFVGTDKGEVGLNSVLGGAVFVTSVVVGIVSLCVADKEVKIDKNCFIRDLSFFLFSLVSLLVILMVGR 265
[Close]
BLAST of EY692916 vs. ExPASy Swiss-Prot
Match: CCX4_ARATH (Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11
Identity = 46/165 (27.88%), Postives = 71/165 (43.03%), Query Frame = 2 
Query:  326 CSSLEAQP--SDGALFNYLSLHFCHFNNHPXXXXXXXXXXXXXXXXXXXKTAQSHFSLVTTKLSSMLNLSPSMAAVTLLALGNGSPDVFSSVQA-LRSGHYRTGFGAILXXXXXXXXXXXXXXXIYAA--PFSVDAGCFVRDVGFYLVAALFVFMCT*VGRFLLG 805
            C  L++ P  S    F+YL   +C   +                      TA  +F     KLS +L L P++A VTLL LGNG+PDVF+S+ A + S     G  ++L               +  A     +D  CF+RD+ F+L   + + +   VG+  +G
Sbjct:  104 CEFLKSNPICSPDGFFDYLKFFYCSCRDFKILGYILLGVWLVALFYLLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFASIAAFVGSDKGEVGLNSVLGGAVFVTCVVVGIVSLCVADKEVKIDKKCFIRDLSFFLFTLVALMVILMVGKVTVG 268
The following BLAST results are available for this feature:
BLAST of EY692916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCX3_ARATH1.619e-1129.19Cation/calcium exchanger 3 OS=Arabidopsis thaliana... [more]
CCX4_ARATH6.151e-1127.88Cation/calcium exchanger 4 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-G10-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692916 ID=EY692916; Name=EY692916; organism=Citrus sinensis; type=EST; length=946bp
CCACGCGTCCGAGCTGAAGCCAAGAATCGATCCAATAACAAGAAAGTAGA
CACTCACCCTCTTACTCTTCAATCAAACAAGAAAAACAAACAAAGATCTG
AAATTTTAGCAAACCCAGAAACAGAAAAAGCAAAAAAATCTGAAGAAAAA
AAGAAAAAACAAAAATTGTTTCAATGGCATGGCCTTTTCATTCCTCAAAT
CCACCTCTATAACCCTAACCCTCATCTGCATTCTCCTGTTCTTCATCCTC
AAAACTCCTTCTTCTTCACGATCACAACAAATCCCACGTAGATCACTTTT
GGACTCAAAAACAAACACCCCAACTTGCTCTTCACTCGAAGCTCAGCCAT
CTGATGGCGCCCTTTTCAACTACCTTTCTCTCCACTTTTGCCATTTCAAT
AACCACCCATTCATCTCACTCTCCTTCCTCTCACTCACCTCCCTCCTCTT
CTTCTACATTCTCATCAAAACCGCCCAATCCCACTTCTCTTTAGTCACCA
CTAAGCTCTCCTCCATGTTAAATCTCTCCCCCAGCATGGCCGCCGTCACT
CTCCTAGCTCTCGGCAACGGGTCCCCGGACGTCTTCTCATCCGTCCAGGC
GCTCCGTTCGGGCCACTACCGAACTGGGTTTGGCGCCATTTTGTCCGCCG
GGGCTTTTGTATCTGCTTTCGTTGTTGGCTTTGTGGCTATCTATGCGGCG
CCATTTAGTGTTGATGCTGGGTGTTTTGTGAGGGATGTGGGGTTTTACTT
GGTGGCTGCNTTGTTTGTGTTTATGTGTACTTGAGTGGGGAGATTTTTGT
TGGGCAGCTGNTGGGTTNNGTGGGTNNNTATTGTCTTGNTGGGATGTGTT
TGGACTGATTGGGATGAGTANAATGAGAGAGAATGAGATGAGATGACCGA
GATGTGAGATGGACAGTCAAGGNTTGGAGCATGAGAAATGATGCTC
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