EY692914

Overview
NameEY692914
Unique NameEY692914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692914 vs. ExPASy Swiss-Prot
Match: M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.668e-34
Identity = 71/157 (45.22%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  125 AVPAYAMSVFRIPQGLCDDFEKAIAKFWWGSSNKHKGIHWARWERMCHAKII-GGLGFRDFSSFNHALLAKQGWRLLHNPESLMAKILKAKYFSHSGFMEAKLDSKPSFVWRSIIWGRELLQEGLRWRIGQGTKISACSKIWL-RNVGSCTSIPPSN 589
            A+P YAMS FR+ + LC     A+ +FWW S    + I W  W+++C +K   GGLGFRD   FN ALLAKQ +R++H P +L++++L+++YF HS  ME  + ++PS+ WRSII GRELL  GL   IG G      +K+WL R +   T +PP N
Sbjct:    2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIH----TKVWLDRWIMDETPLPPLN 154          
BLAST of EY692914 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.240e-21
Identity = 59/171 (34.50%), Postives = 89/171 (52.05%), Query Frame = 2
Query:   53 KLSSWQHKCFSSRGKEVLIKAVAQAVPAYAMSVFRIPQGLCDDFEKAIAKFWWGSSNKHKGIHWARWERMCHAKIIGGLGFRDFSSFNHALLAKQGWRLLHNPESLMAKILKAKYFSHSGFMEAKLDSKP----SFVWRSIIWG-RELLQEGLRWRIGQGTKISACSKIWL 550
            ++S W+ K  S  G+  L KAV  ++P ++MS   +PQ + +  ++    F WGS+ + K  H  +W ++C  K  GGLG R   S N AL++K GWRLL    SL   +L+ KY  H G +       P    S  WRSI  G R+++  G+ W  G G +I   +  W+
Sbjct:   23 RMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY--HVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWV 191          
The following BLAST results are available for this feature:
BLAST of EY692914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
M310_ARATH1.668e-3445.22Uncharacterized mitochondrial protein AtMg00310 OS... [more]
RNHX1_ARATH1.240e-2134.50Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-G08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692914 ID=EY692914; Name=EY692914; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTAG
GCAAGCTGTCCAGTTGGCAGCACAAATGCTTCTCCAGCAGGGGCAAGGAA
GTCCTTATCAAAGCAGTGGCACAAGCTGTGCCAGCTTACGCAATGAGCGT
GTTCAGAATTCCCCAAGGTCTCTGTGATGACTTTGAAAAAGCTATAGCTA
AGTTTTGGTGGGGCTCCTCTAATAAACACAAGGGCATACACTGGGCTAGG
TGGGAAAGGATGTGCCACGCAAAGATTATAGGGGGATTGGGCTTCAGGGA
TTTTTCGAGTTTTAATCATGCTCTTCTAGCAAAACAGGGTTGGAGGTTAC
TGCACAATCCAGAATCTTTAATGGCCAAAATCCTAAAAGCTAAATACTTT
AGTCACAGTGGTTTCATGGAAGCTAAGCTCGACTCAAAACCTTCGTTTGT
GTGGAGAAGCATTATATGGGGTAGGGAGCTGCTTCAGGAGGGATTGAGAT
GGAGAATAGGCCAGGGAACCAAAATCTCAGCCTGCAGCAAAATTTGGTTG
AGGAATGTAGGCAGCTGTACTTCAATACCCCCTTCAAACTTACTCAAAGA
TGTTGTGGTGGCTGATCTCATTAATGACATAAACCAGTGGAAAGAAGATA
AGATTGCCCAGCTCTATCCCAAGGAGATCTCAGAAAGGATTGTAAAGCTC
CCTCTCCCCGAAACCCTCAAGAAGATATTTTGATTTGGAGATTTGATAAG
CACGGAACCTATTCGGTTAAAGTGGCTATNCATTGGCAGTCCAACTTAAA
GTTCGGAAAACCCAGGTGCTCTGATATTCTAATCTCAATGGAAGTCTCTG
GTCACCGAATTCCAGAAAGGTNAGATCTTATGTGGAGGGCTGCAAAATTG
CTTC
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