EY692911

Overview
NameEY692911
Unique NameEY692911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692911_ssr140 microsatellite EY692911_ssr140:140..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.114e-25
Identity = 67/143 (46.85%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  316 RRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKKLFSSTKGSYDRLKLIDSLQRLGVAYHFEQEIEEAINLLTKDVSTLK----DLNETALSFRLLREHGHSIATDVFDKFRNADGKFSES*KG--IYRPFELYEA 726
            RRSANY P IWS + I+S    YK + Y  R  KLK+EVKK+    + S  +L+LID+LQRLG++YHFE EI   +     ++ST K    DL  TAL FRLLRE+G++I  ++F+ F++  GKF  S K   I     LYEA
Sbjct:   71 RRSANYDPPIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKMLVGMENSLVQLELIDTLQRLGISYHFENEIISILKEYFTNISTNKNPKYDLYATALEFRLLREYGYAIPQEIFNDFKDETGKFKASIKNDDIKGVLALYEA 213          
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.778e-23
Identity = 66/146 (45.21%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  244 KNGQSRLNRIIASNISAKPPQVNQRRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKKLFSSTKGSYDRLKLIDSLQRLGVAYHFEQEIEEAI-NLLTKDVSTLK---------DLNETALSFRLLREHGHSIATDVFD 651
            +  Q R  R   S   ++P  +  RRSANY PS+W  E + S    Y  +    R+  LKQEV K+ + T+G  ++L+LID+LQRLGV+YHFEQEI++ + N+  K+V   K         DL  TAL FRLLR+HG SIA DVFD
Sbjct:    4 RQAQRRFTRKTDSKTPSQP--LVSRRSANYQPSLWQHEYLLSLGNTYVKEDNVERVTLLKQEVSKMLNETEGLLEQLELIDTLQRLGVSYHFEQEIKKTLTNVHVKNVRAHKNRIDRNRWGDLYATALEFRLLRQHGFSIAQDVFD 147          
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.568e-22
Identity = 69/198 (34.85%), Postives = 114/198 (57.58%), Query Frame = 1
Query:  229 VAARGKNGQSR--LNRIIASNISAKPPQVNQRRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKKLFSSTKGSYDRLKLIDSLQRLGVAYHFEQEIEEAINLLTK-----DVSTLKDLNETALSFRLLREHGHSIATDVFDKFRNADGKFS----ES*KGIYRPFELYEA-HSSDQSRDVLEKP-ELSTKH 783
            V +R +NG     +  ++A+ +S  P  +  RRSANY PSIW+ + IES   +Y  +    ++  LK++V+ +        ++L+LI+ LQRLG++YHFE+EI+  ++ +       D    ++L  TAL FRLLR+HG+S++ +VF+ F++  G F     E  KG+     LYEA     +  ++LE+  + STKH
Sbjct:   28 VTSRTRNGYLARPVQCMVANKVSTSPDIL--RRSANYQPSIWNHDYIESLRIEYVGETCTRQINVLKEQVRMMLHKVVNPLEQLELIEILQRLGLSYHFEEEIKRILDGVYNNDHGGDTWKAENLYATALKFRLLRQHGYSVSQEVFNSFKDERGSFKACLCEDTKGM---LSLYEASFFLIEGENILEEARDFSTKH 220          
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.839e-21
Identity = 66/179 (36.87%), Postives = 97/179 (54.19%), Query Frame = 1
Query:  211 ILFSPSVAARGKNGQSRLNRIIASNISAKPPQVNQRRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKKLFSSTKGSY-DRLKLIDSLQRLGVAYHFEQEIEEAINLLT----KDVSTLK--DLNETALSFRLLREHGHSIATDVFDKFRNADGKFSES*KGIYRPFELYEA 726
            +++S ++    +  QS    I+            QRRSANY PS W    + S    +  D      + LK++V+K+ +  + +Y D+L+ ID LQ+LGV+YHFE EI+   N+LT    KD + ++  DL+ TAL FRL R+HG +++ DVFD F    GKF      IY    LYEA
Sbjct:   11 VIYSNALRKTLRRPQSSTCIIVTETTPCNKSPTVQRRSANYQPSRWDHHHLLSVENKFAKDKRVRERDLLKEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEID---NILTSSYKKDRTNIQESDLHATALEFRLFRQHGFNVSEDVFDVFMENCGKFDRD--DIYGLISLYEA 184          
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.079e-20
Identity = 66/174 (37.93%), Postives = 104/174 (59.77%), Query Frame = 1
Query:  286 ISAKPPQVN-QRRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKKLFSSTKGSYDRLKLIDSLQRLGVAYHFEQEIEEAINLL---TKDVSTLKD-LNETALSFRLLREHGHSIATDVFDKFRNADGKF-SES*KGIYRPFELYEA-HSSDQSRDVLEKP-ELSTKH 783
            ISAK   +   RRSANY PSIW  + ++S  ++Y  + Y  R E+L+ +VK          D+L+LID+LQRLG+A+ FE EI   +N +    KD +  K+ L  T+L FRLLR+HG+ ++ +VF+ F++  G F  +  KGI     L+EA + S +   ++E+  + ++KH
Sbjct:   42 ISAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFNGFKDDQGGFICDDFKGI---LSLHEASYYSLEGESIMEEAWQFTSKH 212          
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.409e-20
Identity = 61/175 (34.86%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  274 IASNISAKPPQVNQRRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKKLFSSTKGSYDRLKLIDSLQRLGVAYHFEQEI----EEAINLLTKDVSTLKDLNETALSFRLLREHGHSIATDVFDKFRN-ADGKFSES*KG-IYRPFELYEA-HSSDQSRDVLEKPELST 777
            +  N S+     + RRSANY P IWS + ++S    YK + Y  RL KL+++VK++    + S  +L+LID++QRLG++Y FE EI    +E       + +   DL  TAL FRLLR++G  +  ++F+ F+N   G+F  +    I     LYEA     +   +LE+  + T
Sbjct:   63 VVDNPSSTITNNSDRRSANYGPPIWSFDFVQSLPIQYKGESYTSRLNKLEKDVKRMLIGVENSLAQLELIDTIQRLGISYRFENEIISILKEKFTNNNDNPNPNYDLYATALQFRLLRQYGFEVPQEIFNNFKNHKTGEFKANISNDIMGALGLYEASFHGKKGESILEEARIFT 237          
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.840e-20
Identity = 54/151 (35.76%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  316 RRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKKLFSSTKGSY-DRLKLIDSLQRLGVAYHFEQEIEEAINLLTKDVSTLKDLNETALSFRLLREHGHSIATDVFDKFRNADGKFSES-*KGIYRPFELYEA-HSSDQSRDVLE 759
            R  A++ PS+W  + +     +   + YA  +E LK++ + +  +T     D L LID+++RLG++YHFE+EI++ ++ +    S   DL  +AL FRLLR+HG +I+ ++F KF++ +GKF ES    +     LYEA H    + D+LE
Sbjct:   15 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 165          
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.471e-19
Identity = 69/201 (34.33%), Postives = 103/201 (51.24%), Query Frame = 1
Query:  316 RRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKK-LFSSTKGSYDRLKLIDSLQRLGVAYHFEQEIEEAINLLTKDVSTLKDLNE-----TALSFRLLREHGHSIATDVFDKFRNADGKFSES*KGIYR-PFELYEA-HSSDQSRDVLEKPELSTKH**YLSGK*DYFLLKIQHH*IHCMEMQEMSQNSRLSHR 894
            R  A + P++W            +++ Y  R+  LK++VK  L SST  S + + LID L RLGV+YHFE +IEE ++ +      L D  E      A+ FR+ R+HG  +++DVF KF+++DGKF ES +G  +    L+EA H S    D+LE+    TK   YL          ++ H  + +E    S   RL  R
Sbjct:   64 RPLAYFPPTVWGNRFASLTFNPSEFESYDERVIVLKKKVKDILISSTSDSVETVILIDLLCRLGVSYHFENDIEELLSKIFNSQPDLVDEKECDLYTAAIVFRVFRQHGFKMSSDVFSKFKDSDGKFKESLRGDAKGMLSLFEASHLSVHGEDILEEAFAFTKD--YLQSSAVELFPNLKRHITNALEQPFHSGVPRLEAR 262          
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: TPSD2_ABIGR (Myrcene synthase, chloroplastic OS=Abies grandis GN=ag2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.722e-18
Identity = 59/173 (34.10%), Postives = 92/173 (53.18%), Query Frame = 1
Query:  223 PSVAARGKNGQSRLNRIIASNISAKPPQVNQRRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKKLF-----------SSTKGSYDRLKLIDSLQRLGVAYHFEQEIEEAINLLTK----------DVSTLKDLNETALSFRLLREHGHSIATDVFDKFRNADGKF 678
            P++  R + G+S    +  S  +A P    QRR  +YH +IW  + I+S +T Y    Y  R E+L  EVKK+F           SS      RL ++DS++RLG+A HF+ EI  A++ + +            S + DLN TAL FR LR HG++++ +V   F++ +G+F
Sbjct:   34 PNLGMR-RRGKSVTPSMSISLATAAPDDGVQRRIGDYHSNIWDDDFIQSLSTPYGEPSYQERAERLIVEVKKIFNSMYLDDGRLMSSFNDLMQRLWIVDSVERLGIARHFKNEITSALDYVFRYWEENGIGCGRDSIVTDLNSTALGFRTLRLHGYTVSPEVLKAFQDQNGQF 205          
BLAST of EY692911 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.011e-18
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  277 ASNISAKP-PQVNQ--RRSANYHPSIWSPELIESFTTDYKYDLYAGRLEKLKQEVKKLFSS-TKGSYDRLKLIDSLQRLGVAYHFEQEIEEAINLLTKDVSTLK---DLNETALSFRLLREHGHSIATDVFDKFRNADGKFSES-*KGIYRPFELYEA-HSSDQSRDVLEK 762
            AS + A P P ++   R  A++HP IW    I    TD        + E+LK +V+K+       S  +L  ID++QRLGV+YHFE+EIE+ +  + +D +      DL  TAL FRLLREHG  I+ D F+KF++  G F  S    +    ELYEA +      D+L++
Sbjct:    5 ASQVLASPHPAISSENRPKADFHPGIWGDMFIICPDTDIDAATEL-QYEELKAQVRKMIMEPVDDSNQKLPFIDAVQRLGVSYHFEKEIEDELENIYRDTNNNDADTDLYTTALRFRLLREHGFDISCDAFNKFKDEAGNFKASLTSDVQGLLELYEASYMRVHGEDILDE 174          
The following BLAST results are available for this feature:
BLAST of EY692911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
TPS2_CANSA1.114e-2546.85(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
OCIS_ARATH1.778e-2345.21(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
MYRS_QUEIL2.568e-2234.85Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
MYRS1_ARATH2.839e-2136.87Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
RLC1_CITLI1.079e-2037.93(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
TPS1_CANSA1.409e-2034.86(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
5EAS_TOBAC1.840e-2035.76Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
CASS_RICCO3.471e-1934.33Casbene synthase, chloroplastic OS=Ricinus communi... [more]
TPSD2_ABIGR1.722e-1834.10Myrcene synthase, chloroplastic OS=Abies grandis G... [more]
DCS3_GOSAR5.011e-1837.43(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-G05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692911 ID=EY692911; Name=EY692911; organism=Citrus sinensis; type=EST; length=925bp
CCACGCGTCCGCTGTCTTGCAATTGAATTATTGTTTAGATTTATTGCATA
TACACTCCAACAAGATTTGTTGAAATTCAAAAAATATCTCATCTTTTTGC
AATCACTTAGCTCGATTGCATAAATATATACATATATACATATATATATG
AAAATAAAATTAGCTTCCGTCACTTACACATCAAGTGTTGTCAGTGTTCA
TGCTTGTAAAATCTTGTTCTCACCAAGTGTTGCCGCAAGAGGCAAAAATG
GGCAATCAAGATTAAATAGAATTATTGCTTCTAATATCTCTGCTAAACCG
CCGCAAGTGAATCAACGGCGGTCGGCTAATTACCATCCTAGCATCTGGAG
TCCTGAACTCATAGAGTCATTTACCACCGATTATAAATATGATTTGTATG
CCGGCCGATTGGAGAAGTTAAAGCAAGAGGTTAAGAAGTTATTTTCATCC
ACCAAAGGATCTTACGACAGATTAAAGCTAATTGACTCATTGCAGAGGTT
GGGAGTGGCTTATCATTTTGAACAAGAGATTGAAGAGGCTATAAATTTAC
TCACAAAAGATGTTAGTACACTCAAGGATCTCAATGAAACAGCATTGTCT
TTTCGGCTTCTACGGGAACATGGCCATTCAATAGCCACAGATGTGTTCGA
CAAATTCAGAAACGCGGATGGGAAGTTCAGTGAGAGTTAGAAGGGGATAT
ACAGGCCTTTTGAGTTATATGAAGCTCATTCCTCGGATCAGTCAAGAGAT
GTTTTAGAGAAGCCAGAGCTCAGCACTAAACACTAATGATACTTATCAGG
NAAGTGAGACTATTTTCTACTGAAAATACAGCATCACTGAATCCACTGTA
TGGAGATGCAAGAAATGAGTCAAAATTCTCGATTATCCCACAGAGATCAA
AAATTNGCGTGTGCTGGACTACCAG
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