EY692897

Overview
NameEY692897
Unique NameEY692897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692897_ssr12 microsatellite EY692897_ssr12:12..29. BLAST: Citrus ESTs to Prunus persica proteins V1
EY692897_ssr82 microsatellite EY692897_ssr82:82..96. BLAST: Citrus ESTs to Prunus persica proteins V1
EY692897_ssr112 microsatellite EY692897_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRPF3_HUMAN (Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.409e-19
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  499 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKILR 798
            +P   LL   LD LQ+KD   +F+EPV+  E+PDY E I  PMDF T+R KL +  Y TLE+FE+D  LI +N M+YNA DTI+ R A  + +L   ILR
Sbjct:  592 MPFNVLLRTTLDLLQEKDPAHIFAEPVNLSEVPDYLEFISKPMDFSTMRRKLESHLYRTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILR 691          
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRD9_MOUSE (Bromodomain-containing protein 9 OS=Mus musculus GN=Brd9 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.127e-17
Identity = 45/133 (33.83%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  400 GSADC-EKGEKTISGANPTNNNQGAQLELGPSTPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKIL 795
            G AD  + G+K      P    +  + +   +   P ++LL   L +LQ+KD +G F+ PV     P Y  +I+HPMDFGT+++K+    Y ++ +F+ D  L+C N M YN PDT+Y++ A+ I     K++
Sbjct:  105 GEADAFDPGKKVEVEPPPDRPVRACRTQPAENESTPIQRLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMM 237          
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRD1_HUMAN (Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.127e-17
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  514 LLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKILRIXGRTV 816
            LL  +LD+LQ KD   +F++PV  +E+PDY + I+HPMDF T+R +L    Y  L +FE+D  LI  N M+YNA DT+++R A  + +    +LR   R V
Sbjct:  570 LLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREV 670          
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRD9_HUMAN (Bromodomain-containing protein 9 OS=Homo sapiens GN=BRD9 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.390e-17
Identity = 43/129 (33.33%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  409 DCEKGEKTISGANPTNNNQGAQLELGPSTPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKIL 795
            D + G+K      P    +  + +   +   P ++LL   L +LQ+KD +G F+ PV     P Y  +I+HPMDFGT+++K+    Y ++ +F+ D  L+C N M YN PDT+Y++ A+ I     K++
Sbjct:  109 DFDPGKKVEVEPPPDRPVRACRTQPAENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMM 237          
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRD9_DANRE (Bromodomain-containing protein 9 OS=Danio rerio GN=brd9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.563e-16
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  502 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKIL 795
            P ++LL   L  LQ+KD +G F+ PV     P Y  +I+HPMDF T+++K+A   Y T+ +F+ D  L+C N M YN P+T+Y++ A+ +     K++
Sbjct:  170 PHQQLLEHFLRLLQRKDAHGFFAFPVTDAIAPGYSMIIKHPMDFSTMKDKIAANEYKTITEFKADFKLMCDNAMVYNRPETVYYKAAKKLLHTGFKMM 267          
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRPF1_HUMAN (Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.734e-15
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1
Query:  514 LLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKILR 798
            LL   L++LQ+KDT  +FSEPV   E+PDY + I+ PMDF T++  L    Y   + FE+D  LI SN ++YNA DTI++R A  + E    +LR
Sbjct:  636 LLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLR 730          
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRD9_XENTR (Bromodomain-containing protein 9 OS=Xenopus tropicalis GN=brd9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.045e-15
Identity = 38/102 (37.25%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  490 STPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKIL 795
            STPL  ++LL + L +LQ+KD  G F+ PV  +  P Y  +I++PMDF T++ K++   Y ++ +F+ D  L+C N M YN P+T+Y++ A+ +     K++
Sbjct:  150 STPL--QQLLEYFLRQLQRKDPNGFFAFPVTDQIAPGYFMIIKNPMDFSTMKEKISQNEYKSVTEFKADFKLMCDNAMTYNRPETVYYKLAKKLLHTGFKMM 249          
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRD9_XENLA (Bromodomain-containing protein 9 OS=Xenopus laevis GN=brd9 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.588e-15
Identity = 38/102 (37.25%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  490 STPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKIL 795
            STPL  ++LL + L +LQ+KD  G F+ PV  +  P Y  +I++PMDF T++ K++   Y ++ +F+ D  L+C N M YN P+T+Y++ A+ +     K++
Sbjct:   80 STPL--QQLLEYFLRQLQRKDPNGFFAFPVTDQIAPGYFMIIKNPMDFSTMKEKISQDEYKSVTEFKADFKLMCDNAMTYNRPETVYYKLAKKLLHTGFKMM 179          
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRD7_CHICK (Bromodomain-containing protein 7 OS=Gallus gallus GN=BRD7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.588e-15
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  472 QLELGPSTPL-------------PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKIL 795
            +LEL P  PL             P ++ L  ++ +LQ+KD    FS PV     P Y  +I++PMDF T++ K+ N  Y ++E+ + +  L+C+N M YN PDTIY++ A+ +     KIL
Sbjct:  112 RLELSPEKPLTSSLSKQEEVEQTPLQEALNQLMRQLQRKDPSSFFSFPVTDFIAPGYSMIIKNPMDFSTMKEKIKNNGYQSIEELKDNFKLMCTNAMTYNKPDTIYYKAAKKLLHSGMKIL 232          
BLAST of EY692897 vs. ExPASy Swiss-Prot
Match: BRD7_PONAB (Bromodomain-containing protein 7 OS=Pongo abelii GN=BRD7 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.270e-14
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  472 QLELGPSTPL-------------PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNGMQYNAPDTIYFRQARSIHELAKKIL 795
            +L+L P  PL             P ++ L  ++ +LQ+KD    FS PV     P Y  +I+HPMDF T++ K+ N  Y ++E+ + +  L+C+N M YN P+TIY++ A+ +     KIL
Sbjct:  112 RLDLPPEKPLTSSLAKQEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKIL 232          
The following BLAST results are available for this feature:
BLAST of EY692897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
BRPF3_HUMAN4.409e-1950.00Bromodomain and PHD finger-containing protein 3 OS... [more]
BRD9_MOUSE4.127e-1733.83Bromodomain-containing protein 9 OS=Mus musculus G... [more]
BRD1_HUMAN4.127e-1743.56Bromodomain-containing protein 1 OS=Homo sapiens G... [more]
BRD9_HUMAN5.390e-1733.33Bromodomain-containing protein 9 OS=Homo sapiens G... [more]
BRD9_DANRE4.563e-1638.78Bromodomain-containing protein 9 OS=Danio rerio GN... [more]
BRPF1_HUMAN1.734e-1545.26Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2[more]
BRD9_XENTR5.045e-1537.25Bromodomain-containing protein 9 OS=Xenopus tropic... [more]
BRD9_XENLA6.588e-1537.25Bromodomain-containing protein 9 OS=Xenopus laevis... [more]
BRD7_CHICK6.588e-1535.54Bromodomain-containing protein 7 OS=Gallus gallus ... [more]
BRD7_PONAB3.270e-1434.71Bromodomain-containing protein 7 OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-F03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692897 ID=EY692897; Name=EY692897; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGGAAGAAGAAGAAGAAGAAAGGGAGGCCGTCTCTGTTAGA
TCTTCAAAAGCGTAATCTCAGGGAGCAGCAGCAACAACAACAACAACAGC
TGCAGCTGAAAAAGAAGAAGAAGAAAGGCCTCAAGGATGGCAATAATTAC
AACTCTGCCCCTATTCTTACCCCTAATTACAATTCCGCCGCTGCCACCGC
CCTTCGGCGATCTTCGCGGCGGAATCCCAATCCCTCGCCCGAGAAGGTTT
CCGAAGGGGAGGACGATGAATCCGAGGGTAATCGGCGCGAGAAGGACCTG
AAGCTTGTGCTCAAGTATCAAATATCCAATTCGAACGCCTCCGATTCGGA
CGAAAACGCGCACAAGAAGCGGAAGATCAATGCAATCGGTGGTGGATCTG
GCAGTGCTGACTGTGAAAAGGGAGAGAAGACTATTTCTGGTGCGAATCCA
ACAAATAACAACCAAGGGGCTCAGTTGGAATTGGGACCCTCAACGCCTTT
ACCAGATAAAAAGCTATTGCTGTTCATCCTCGATAGACTTCAAAAGAAGG
ATACTTATGGGGTGTTTTCTGAGCCAGTGGACCCAGAAGAGCTTCCAGAT
TACTGTGAGGTCATCGAGCATCCCATGGATTTTGGGACAGTGAGGAACAA
ACTAGCTAACGGAGCTTATGCCACCCTGGAGCAGTTTGAGAAAGATGTTT
TCTTGATATGCTCCAATGGCATGCAGTATAATGCACCCGATACCATATAT
TTTCGACAGGCAAGATCTATACATGAGCTGGCAAAAAAGATTTTGAGAAT
TNAAGGCAGGACAGTGATGATAACGAGCTGAACCTAAAGTAGTAAGGAGA
GGAGACACCGACGAGAAATTTAAAAGCCATGGGCCGGCCTCCTNGNACGC
GCT
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