EY692883

Overview
NameEY692883
Unique NameEY692883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  212 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGM 544
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+ V+PK+ N PG+
Sbjct:  136 QNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 250          
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 67/118 (56.78%), Postives = 78/118 (66.10%), Query Frame = 2
Query:  278 NKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGMKQYRPXAFNPYM-----GYRGR-RPYVP 610
            +KE  D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R L V PK+ NVPGM + R             GYRGR R + P
Sbjct:   48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAP 165          
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  212 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGM 544
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+ V+PK+ N PG+
Sbjct:  131 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245          
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.947e-26
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  212 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGM 544
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+ V+PK+ N PG+
Sbjct:  140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 254          
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.947e-26
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  212 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGM 544
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+ V+PK+ N PG+
Sbjct:  140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 254          
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.947e-26
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  212 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGM 544
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+ V+PK+ N PG+
Sbjct:  130 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 244          
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.573e-26
Identity = 59/115 (51.30%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  212 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGM 544
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+ V+PK+ N PG+
Sbjct:  131 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245          
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.704e-24
Identity = 66/165 (40.00%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  212 QAKVEKEM--GAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGMKQYRPXAFNPY----------------------MGYRGRRPYVPPLFYSPY 631
            Q++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+ V+ K+ N PG+      A   +                      MGYRGR  Y     Y+PY
Sbjct:   65 QSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANY-----YAPY 224          
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 60/132 (45.45%), Postives = 84/132 (63.64%), Query Frame = 2
Query:  212 QAKVEKEM--GAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGMKQYRPXAFNPYMGYRGRR 598
            Q++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+ V+ K+ N PG+      A   + G RG R
Sbjct:   65 QSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRG-RGAR 195          
BLAST of EY692883 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.159e-22
Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = 2
Query:  281 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLNVLPKKDNVPGMKQYRPXAFNPYMGYRGR 595
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR + VLPK+ N+PG+            G+RGR
Sbjct:   87 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISS------TDRGGFRGR 186          
The following BLAST results are available for this feature:
BLAST of EY692883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PABP2_MOUSE2.256e-2652.17Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PAB2_SCHPO2.256e-2656.78Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PAB2A_XENLA2.256e-2652.17Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PABP2_HUMAN2.947e-2652.17Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN2.947e-2652.17Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2B_XENLA2.947e-2652.17Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR8.573e-2651.30Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PABP2_DROME4.704e-2440.00Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
PABP2_DROPS1.788e-2345.45Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
EPA2B_XENLA1.159e-2248.11Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-E01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692883 ID=EY692883; Name=EY692883; organism=Citrus sinensis; type=EST; length=930bp
CCACGCGTCCGCGGAATACAGAAGAGAGAGAATGGAGGAAGAAGAGCACG
AGGTTTACGGAGGCGAAATCCCTGACGTGGAAGGTGACATGGACGCTCAC
AATACTGACGTCGACATGTCGGCGGCCGATGACGACGCCGTCAAGGAGCT
GGATGAGATGAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTC
TTCGTGAGATGCAAGCTAAGGTCGAGAAAGAGATGGGCGCTGCTCAAGAT
CCTGCTAATGTGGCTGCTAATCAAGCAAACAAAGAAGAGGCAGATTCACG
ATCAGTCTTTGTTGGCAATGTAGATTATGCATGCACTCCTGAAGAAGTGC
AGCAACATTTCCAATCCTGTGGTACTGTAAACAGGGTAACTATTCTGACA
GACAAGTTTGGCCAGCCAAAGGGTTTTGCTTATGTGGAATTCCTTGAAAT
AGATGCTGTTCAAGAGGCTCTCCAGTTGAATGAGTCTGAATTACATGGNC
GTCAACTGAACGTTTTGCCTAAGAAGGACAATGTCCCTGGTATGAAGCAG
TATCGTCCAANGGCGTTCAATCCTTACATGGGGTACCGAGGCAGGAGGCC
CTATGTACCTCCTTTATTCTATTCACCTTATGGATATGGGAAAGTTCCCG
AGGTCAGAAGGGCCATGAGGTACATGCCCTACTACTAGCAGATTGTGCTC
CTGGTTGAGATGGTGACATTTGTGGATCATCCCTAAACTAAAAAATCAAT
GGATCCTGGGGCTTTTGATCCTGCTTTAATAGGGAACAAAGATTTATTCC
TAACTGCTTANATTGATGCCTGAAGGTCCACTTATTGCATGAACTTATGG
ATTTCTGGTGAATTGGATGGTGCCCCCAAATANANNTTCCCCCACAAAAA
AATAATTAAAAAAAAAAGGCCGCCCTCAAA
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