EY692882

Overview
NameEY692882
Unique NameEY692882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10507 contig Csv1_Contig10507:14..945. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: HEXR_PSEAE (HTH-type transcriptional regulator hexR OS=Pseudomonas aeruginosa GN=hexR PE=4 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.850e-42
Identity = 93/215 (43.26%), Postives = 137/215 (63.72%), Query Frame = -3
Query:    1 NLLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCRNQTPLA 645
            NLL+ I      L K+E KVA+ +L +P      S+A LA +  +SEPT+ RFCR+ G SG+ +LK++LAQSLA+GA+F   A+ EDD    Y+ KIF  T+ +L    + LDP  + +AV  + QA+++ F+G GAS +VA DAQHKFFR  L  +A +D  MQ M A      D+ + IS +GR+++L+  A+L RE+GA+++ L    +PLA
Sbjct:    3 NLLEQIQSRLDELNKAERKVAEVILQNPQQATRFSIAALAQAAAVSEPTVNRFCRSFGMSGYPELKIQLAQSLASGAAFVTQAVAEDDGPEAYTRKIFSNTIASLDSAHKLLDPRVIDRAVDLLIQARQIHFFGLGASASVALDAQHKFFRFNLAVSAQADVLMQRMIASVAHTGDLFVVISYTGRTRELVEVAHLARENGASVLGLTAAGSPLA 217          
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: HEXR_ECOLI (HTH-type transcriptional regulator hexR OS=Escherichia coli (strain K12) GN=hexR PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 7.262e-41
Identity = 92/216 (42.59%), Postives = 131/216 (60.65%), Query Frame = -3
Query:    1 LNLLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCRNQTPLA 648
            +N+L+ I      L KSE KVA+ +L  P   +HSS+A +A    +SEPT+ RFCR++   GF D KL LAQSLA G  +    ++EDDSV  Y+ KIF++ + TL  VR  LD   + +AV  ++QA+++ F+G G+S AVA DA +KFFR  +      D  +Q MS +     DV + IS +GR+K+L+  A L RE+ A +I L    TPLA
Sbjct:    1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLA 216          
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: GLK_BURTA (Bifunctional protein glk OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=glk PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.759e-40
Identity = 79/214 (36.92%), Postives = 128/214 (59.81%), Query Frame = -3
Query:    1 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCRNQTPLA 642
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  + TPLA
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: GLK_BURPS (Bifunctional protein glk OS=Burkholderia pseudomallei GN=glk PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.759e-40
Identity = 79/214 (36.92%), Postives = 128/214 (59.81%), Query Frame = -3
Query:    1 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCRNQTPLA 642
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  + TPLA
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: GLK_BURP1 (Bifunctional protein glk OS=Burkholderia pseudomallei (strain 1710b) GN=glk PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.759e-40
Identity = 79/214 (36.92%), Postives = 128/214 (59.81%), Query Frame = -3
Query:    1 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCRNQTPLA 642
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  + TPLA
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: GLK_BURXL (Bifunctional protein glk OS=Burkholderia xenovorans (strain LB400) GN=glk PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.707e-40
Identity = 79/214 (36.92%), Postives = 128/214 (59.81%), Query Frame = -3
Query:    1 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCRNQTPLA 642
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  + TPLA
Sbjct:  344 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPVSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVERAIDLLNGARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 557          
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: GLK_BURS3 (Bifunctional protein glk OS=Burkholderia sp. (strain 383) GN=glk PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.147e-40
Identity = 79/214 (36.92%), Postives = 127/214 (59.35%), Query Frame = -3
Query:    1 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCRNQTPLA 642
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   ++ A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  + TPLA
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVENAIEILNGARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: GLK_BURCA (Bifunctional protein glk OS=Burkholderia cenocepacia (strain AU 1054) GN=glk PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.147e-40
Identity = 79/214 (36.92%), Postives = 127/214 (59.35%), Query Frame = -3
Query:    1 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCRNQTPLA 642
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   ++ A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  + TPLA
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVENAIEILNGARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: GLK_BURMA (Bifunctional protein glk OS=Burkholderia mallei GN=glk PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.049e-39
Identity = 78/214 (36.45%), Postives = 128/214 (59.81%), Query Frame = -3
Query:    1 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCRNQTPLA 642
            + + I Q R  L  +E +VAD  L  P ++++  + ++A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  + TPLA
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVNIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY692882 vs. ExPASy Swiss-Prot
Match: Y211_THETN (Uncharacterized HTH-type transcriptional regulator TTE0211 OS=Thermoanaerobacter tengcongensis GN=TTE0211 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.621e-32
Identity = 82/201 (40.80%), Postives = 116/201 (57.71%), Query Frame = -3
Query:    1 SELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCR-NQTPLA 600
            SE K+A ++L +P  V   S+ +LA++   SE +I+RFCR IG  GFQ+LK+K+A SLA         I  +D V     KI +     +      L+  EL KA  A++ A +++FYG  ASG VA DA  KF R+ +   AY D H+Q  SAV LK  DVA  IS SG +K+++      +E+GAT I+L +  Q+PLA
Sbjct:   18 SEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIGLKGFQELKIKIAVSLAKQTRKLDGGITSEDDVMAVIQKIANFNKQAIDSTIAVLNAEELTKAAEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNLKKGDVAFGISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLA 218          
The following BLAST results are available for this feature:
BLAST of EY692882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
HEXR_PSEAE3.850e-4243.26HTH-type transcriptional regulator hexR OS=Pseudom... [more]
HEXR_ECOLI7.262e-4142.59HTH-type transcriptional regulator hexR OS=Escheri... [more]
GLK_BURTA2.759e-4036.92Bifunctional protein glk OS=Burkholderia thailande... [more]
GLK_BURPS2.759e-4036.92Bifunctional protein glk OS=Burkholderia pseudomal... [more]
GLK_BURP12.759e-4036.92Bifunctional protein glk OS=Burkholderia pseudomal... [more]
GLK_BURXL4.707e-4036.92Bifunctional protein glk OS=Burkholderia xenovoran... [more]
GLK_BURS36.147e-4036.92Bifunctional protein glk OS=Burkholderia sp. (stra... [more]
GLK_BURCA6.147e-4036.92Bifunctional protein glk OS=Burkholderia cenocepac... [more]
GLK_BURMA1.049e-3936.45Bifunctional protein glk OS=Burkholderia mallei GN... [more]
Y211_THETN1.621e-3240.80Uncharacterized HTH-type transcriptional regulator... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-D12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692882 ID=EY692882; Name=EY692882; organism=Citrus sinensis; type=EST; length=932bp
CGCCAATGGCGTCTGGTTCCGGCACAGGGTAATCAGGGTCGCGCCGCTTT
CACGCACCAGGTTGGCGGTGATCAGCAAATCCTTGGAGCGGCCGGACTGG
GAAATGCAGATCGCCACGTCGGTGGGCTTCAACGTCACTGCCGACATCGC
CTGCATGTGCGGGTCGCTGTAGGCCGCCGCCGTCAGCAGCAAACGGAAGA
ACTTGTGCTGGGCATCCGCCGCCACCGCACCGGACGCGCCGAAACCATAG
AACTCCACGCGCTGGGCCTGGGACATGGCGGTCACGGCTTTTTGCAGCTC
TACCGGGTCAAGCTTTTCCCGCACTTCCATCAGGGTATGCAGGGTGGTGT
CGAAGATTTTCAGGCTGTAGTCGGCGACGGAGTCGTCTTCGTGAATCGCG
AACTGCCCGAAGCTCGCACCGGCGGCGAGGCTCTGGGCCAGCTTGAGCTT
CAAGTCCTGGAACCCGGAGCAACCAATGGCGCGGCAGAAGCGCACGATGG
TCGGCTCGCTGATGCCCACGCTGTGGGCCAGGTCGGCCATGGAACTGTGC
ATCACAGCCGCAGGGTCAAGCAGCACGTGATCGGCAACCTTGAGTTCCGA
TTTGCGTAACAGGTGGCGCGACTGGGCGATATGTTGCAACAGGTTCAAAG
GGCTGGACTCTTGTTATTGGCAGACGCCAGGGATGTAGCAAGCTTGTAGT
TATACTACAAGAATTACCGATTTGCCCGCTCGATGCATCACTTAATCACG
CTGCTGCCCGCTGAAAACAGCGGCANGACCGATGTAGCCCCGCGTGCGGC
TTGGGCTCAACTACGGAAATCGGCATTTTTTCGTAACAATCCCCGCAGAC
GTCGCTTNCACCGNCGACTGATCAATAGCCCTGCACTCATCGCATGCTCG
GCCGCANGAAATCAGCTGCTGCTGATCTCCAC
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