EY692864

Overview
NameEY692864
Unique NameEY692864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:1..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.966e-94
Identity = 161/213 (75.59%), Postives = 182/213 (85.45%), Query Frame = 2
Query:  134 KSGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI*N-GKVVFVPWTETDFRTGEAPWW 763
            +S +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA+I   GKV+FVPW ETDFRTG+APWW
Sbjct:   16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWW 228          
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.567e-94
Identity = 161/212 (75.94%), Postives = 182/212 (85.85%), Query Frame = 2
Query:  134 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAN--I*NGKVVFVPWTETDFRTGEAPWW 763
            KSG+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPDM KR+ +NLLLLGA+SLPT  MLVPY +F  PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLKGDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQYN+QGRVVRGPAPLSLALAH +  + +GKVVFVPW ETDFRTG+APWW
Sbjct:   18 KSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWW 229          
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 3.707e-93
Identity = 161/212 (75.94%), Postives = 183/212 (86.32%), Query Frame = 2
Query:  134 KSGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI*NGKVVFVPWTETDFRTGEAPWW 763
            K+GMF PS A L K  R  ++       GMK+ CQATSIPAD VPDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH ++ +GKVVFVPWTETDFRTGEAPWW
Sbjct:   18 KNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWW 228          
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 5.919e-91
Identity = 156/211 (73.93%), Postives = 173/211 (81.99%), Query Frame = 2
Query:  134 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-*NGKVVFVPWTETDFRTGEAPWW 763
            K+G + PSRA L K AR     K  +  K+ CQATSIPADRVPDMGKRQ MNLLLLGA+SLPT  ML+PY  FF PP  G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL+H +I   GKVVFVPW ETDFRTGE PWW
Sbjct:   19 KNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVETDFRTGENPWW 229          
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.722e-90
Identity = 162/215 (75.35%), Postives = 182/215 (84.65%), Query Frame = 2
Query:  134 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI*NGKVVFVPWTETDFRTGEAPWW 763
            KSG+   S+  L+KP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPYATFFAPPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I +GKVVFVPW ETDFRTGEAPWW
Sbjct:   16 KSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWW 227          
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 3.248e-89
Identity = 160/215 (74.42%), Postives = 179/215 (83.26%), Query Frame = 2
Query:  134 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI*NGKVVFVPWTETDFRTGEAPWW 763
            KSG+   S+  LVKP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPY TFF PPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I +GKVVFVPW ETDFRTGE PWW
Sbjct:   16 KSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWW 227          
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 9.450e-89
Identity = 159/215 (73.95%), Postives = 177/215 (82.33%), Query Frame = 2
Query:  134 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI*NGKVVFVPWTETDFRTGEAPWW 763
            KSG+   S+A LVKP +   +  + MG    MK KC A SIPAD RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G    GT AKDA GND++  +WL TH PG RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQG+VVRGPAPLSLALAHA+I +GKVVFVPW ETDFRTG++PWW
Sbjct:   18 KSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGDSPWW 229          
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.970e-87
Identity = 154/209 (73.68%), Postives = 172/209 (82.30%), Query Frame = 2
Query:  149 CPSRAFLVKPARTQMVTKNPM---GMKIKCQA-TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI*NGKVVFVPWTETDFRTGEAPWW 763
            C SRA L KP +     +  +      I CQA +SIPADRVPDMGKRQLMNLLLLGA+SLPT  MLVPY  FF P G G+AGGG  AKD +GND++A +WL THGP DRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQGRVVRGPAPLSLAL HA++ +GKV+FVPW ETDFRTG+ PWW
Sbjct:   16 CRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGDNPWW 224          
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 1.195e-83
Identity = 146/206 (70.87%), Postives = 164/206 (79.61%), Query Frame = 2
Query:  149 CPSRAF-LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI*NGKVVFVPWTETDFRTGEAPWW 763
            C +RA  L KP +     +  +   I C A SI ADRVPDM KR+LMNLLLLGA+SLPT  MLVPY +F  P G GS  GG  AKD +GNDI+  DWL THGP DRTL +GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL HA++ +GKVVFVPW ETDFRTG+ PWW
Sbjct:   16 CRTRASSLCKPVKGLGFGRERIPRNITCMAGSISADRVPDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPWW 221          
BLAST of EY692864 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.049e-67
Identity = 116/170 (68.24%), Postives = 136/170 (80.00%), Query Frame = 2
Query:  257 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-*NGKVVFVPWTETDFRTGEAPWW 763
            VPD+G+RQ MNLL  G ++      L P   +F PP  G  GGG TAKDA+GND+I + +L +H  GDRTL +GLKGDPTYLVV++DKTLA+YGINAVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHAN+  N KVVF  WTETDFRTGE PWW
Sbjct:    9 VPDLGRRQFMNLLTFGTITGVAAGALYPIVKYFIPPSAGGTGGGVTAKDALGNDVIVSQFLTSHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPWW 178          
The following BLAST results are available for this feature:
BLAST of EY692864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_ARATH1.966e-9475.59Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA2.567e-9475.94Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL3.707e-9375.94Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG5.919e-9173.93Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC1.722e-9075.35Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_TOBAC3.248e-8974.42Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU9.450e-8973.95Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ3.970e-8773.68Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT1.195e-8370.87Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_MICAN2.049e-6768.24Cytochrome b6-f complex iron-sulfur subunit OS=Mic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-C06-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692864 ID=EY692864; Name=EY692864; organism=Citrus sinensis; type=EST; length=938bp
CCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGAAATACAAAGTCT
CACTCGGTTGCCTCCAATAATTCTCCACAATGGCTTCCTCCTCTTCTCTC
TCCTCAGCAACTCCTTCTCAGCTATGCTCAAGCAAGAGTGGTATGTTCTG
TCCATCGAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACAA
AGAATCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGCT
GATAGAGTGCCTGATATGGGCAAGAGGCAGCTCATGAATTTGCTTCTCTT
GGGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACCT
TCTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAG
GATGCCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACGG
CCCTGGGGACCGAACCCTCACCGAAGGATTGAAGGGAGATCCAACCTACC
TTGTTGTGGAAAAAGACAAAACACTTGCATCATATGGAATCAATGCTGTC
TGCACTCACCTTGGATGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTT
CATCTGTCCCTGCCACGGATCCCAATACAATAACCAAGGAAGAGTTGTGA
GAGGGCCTGCTCCATTGTCATTGGCATTGGCTCATGCCAACATTTGAAAT
GGTAAGGTAGTCTTCGTTCCATGGACGGAAACAGATTTCAGAACTGGTGA
AGCTCCATGGTGGGGCTAAACTTGNTCCGGGTGCTGTGCTTNNCATATCA
AGTTTTGCCCGTCGGTTTGCTTTGCCGTACTGCATAACATACTGGTACGG
AACATGCTTATCAGATGAAGCTACACATGTAAGCTACTGGGCTGATCATG
CTATCTGGTATCTGGGCAATCTGACATTTTCTCTATCC
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