EY692838

Overview
NameEY692838
Unique NameEY692838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY692838 vs. ExPASy Swiss-Prot
Match: KATAM_ARATH (Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.920e-18
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = 2 
Query:  476 MRRRVAASGPTEQMDKGAGKNHQNRLCFLVTLSAFFWILLLYFHFIVLGTNNVSESNQLETSIKNSESSFVHLTNDDHLAEP 721
            MRRR A   PTE M+KG GKN  NR+C LV LS FFW LLLYFHF+VLGT+N+ +  QL+ S   S+ S V L  D    EP
Sbjct:    7 MRRRSAEVSPTEPMEKGNGKNQTNRICLLVALSLFFWALLLYFHFVVLGTSNIDKQLQLQPSYAQSQPSSVSLRVDKFPIEP 88
The following BLAST results are available for this feature:
BLAST of EY692838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KATAM_ARATH2.920e-1856.10Xyloglucan galactosyltransferase KATAMARI1 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-A04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692838 ID=EY692838; Name=EY692838; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGCAAATCAAATTAAATATCTTGTAAGTTTATTTCTCTCCT
CTGTTTTCCTCTTTTGCTTTCTTAATTTTTCTATCATTTCTGTCCTTGAA
TTCTTTCTGTTTTGCTGCTGACATGTCCGTAACAGATCATATGTAGCCCT
CATTTTCTCATCATTTATGTTGAATCGTCGGTTTGTTCTTGAAAATCAAG
ATCCTCTTCTTTTGATTTGATAGTTCAGTTACCCTTTTGGTGATTAGTCG
GTTACAGTTTAAAAGTTTTTTTTTTTTTTTATCTTTGTTGTATTTAAGCT
TCATTTCCGGAGACTTAAGCTGAACTATCGAAACTAGGGTTAGGGTTTGT
CATTTTTTGTAATTTACGTGGTTTTGCGAGTTGTGGGTGTTAGATTATAA
CTGGGTTTGTGAGTGTTTTTGGTGAAATGGGAAGTTGTTTGATTGGTTGA
TTTATTTGGGGAAATTTAGAATCTGATGAGACGCCGGGTGGCGGCGAGTG
GCCCGACAGAGCAAATGGATAAGGGAGCCGGGAAGAATCATCAAAATAGG
CTATGTTTTTTAGTTACATTGTCTGCTTTCTTTTGGATTCTGTTGTTGTA
CTTTCATTTTATTGTGCTCGGGACTAATAATGTTAGTGAATCTAACCAAT
TGGAAACCAGTATCAAAAACTCAGAATCTTCTTTTGTCCATTTAACTAAT
GATGATCATCTAGCAGAACCTCGGAAGGAAGCCACCAGCCTAGCACTTTT
CGTGAATCTACTGATTCACATTCAAACAGTTAATCAGAACCACTANNNCC
TGACAGTCGTTCATGATCTCCCCATCACATCCCAACCATTAACCAGAAAC
CATGNTCATCATCTCCGCATCACACCCNATCCCGTATTCAGAACCATAGT
CAGAGATGCTGTCATGAG
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