EY692835

Overview
NameEY692835
Unique NameEY692835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692835_ssr835 microsatellite EY692835_ssr835:835..846. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692835 vs. ExPASy Swiss-Prot
Match: ERG19_BOVIN (Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.250e-19
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  175 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK 384
            MA+EK +++VT   P NIAV+KYWGKRDE LILP+N S+SVTL  D L TTTT A+S  F +DR+WLNG+
Sbjct:    1 MASEKPIVVVTCTAPVNIAVVKYWGKRDEELILPINSSLSVTLHQDQLKTTTTAAISRDFTEDRIWLNGR 70          

HSP 2 Score: 21.1718 bits (43), Expect = 1.250e-19
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  390 EISLGGGRYQNCLKEIRSRA 449
            E  +G  R Q CL+EIR  A
Sbjct:   71 EEDMGHPRLQACLREIRRLA 90          
BLAST of EY692835 vs. ExPASy Swiss-Prot
Match: ERG19_MOUSE (Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.749e-19
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  175 MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK 384
            MA+EK   LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTTVA+S  F +DR+WLNG+
Sbjct:    1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGR 71          

HSP 2 Score: 20.7866 bits (42), Expect = 2.749e-19
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  390 EISLGGGRYQNCLKEIRSRA 449
            E  +G  R Q CL+EIR  A
Sbjct:   72 EEDVGQPRLQACLREIRRLA 91          
BLAST of EY692835 vs. ExPASy Swiss-Prot
Match: ERG19_RAT (Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.023e-18
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  175 MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK 384
            MA+EK   LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTT A+S  F +DR+WLNG+
Sbjct:    1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINPSLSVTLHQDQLKTTTTAAISKDFTEDRIWLNGR 71          

HSP 2 Score: 20.7866 bits (42), Expect = 1.023e-18
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  390 EISLGGGRYQNCLKEIRSRA 449
            E  +G  R Q CL+EIR  A
Sbjct:   72 EEDVGQPRLQACLREIRRLA 91          
BLAST of EY692835 vs. ExPASy Swiss-Prot
Match: ERG19_HUMAN (Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.729e-18
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  175 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK 384
            MA+EK +  VT   P NIAVIKYWGKRDE L+LP+N S+SVTL  D L TTTT  +S  F +DR+WLNG+
Sbjct:    1 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDFTEDRIWLNGR 70          

HSP 2 Score: 20.7866 bits (42), Expect = 1.729e-18
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  390 EISLGGGRYQNCLKEIRSRA 449
            E  +G  R Q CL+EIR  A
Sbjct:   71 EEDVGQPRLQACLREIRCLA 90          
BLAST of EY692835 vs. ExPASy Swiss-Prot
Match: ERG19_DANRE (Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.061e-18
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  199 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKRR 390
            MVT   P NIAVIKYWGKRDE LILPVN S+SVTL  DHL TTTT+A S SF +D +WLNGK +
Sbjct:   11 MVTCTAPVNIAVIKYWGKRDEDLILPVNASLSVTLHQDHLRTTTTIACSRSFHKDCIWLNGKEQ 74          
BLAST of EY692835 vs. ExPASy Swiss-Prot
Match: ERG19_DICDI (Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.225e-16
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  202 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKR 387
            VT   P NIAVIKYWGKRDE +ILP+N S+S TL  D L TTTT+  S  + +D ++LNGK+
Sbjct:    6 VTCTAPVNIAVIKYWGKRDENIILPLNSSLSGTLHQDDLKTTTTIVASEDYTEDELYLNGKK 67          

HSP 2 Score: 25.7942 bits (55), Expect = 7.225e-16
Identity = 18/43 (41.86%), Postives = 21/43 (48.84%), Query Frame = 3
Query:  411 RYQNCLKEIRSRACDVXXXXXXXXXXXXXWQKLHLHIASFNIF 539
            RYQN LK IRSRA  +              +K  +HIAS N F
Sbjct:   74 RYQNVLKMIRSRATKLMD------------KKHCVHIASINNF 104          
BLAST of EY692835 vs. ExPASy Swiss-Prot
Match: ERG19_SCHPO (Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe GN=erg19 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.802e-14
Identity = 38/66 (57.58%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  184 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNG 381
            +K V   T   P NIAVIKYWGKRD  L LP N SISVTL  D L T TT + S  F+ D +WLNG
Sbjct:    2 DKKVYQCTVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFENDTLWLNG 67          
BLAST of EY692835 vs. ExPASy Swiss-Prot
Match: ERG19_DEBHA (Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii GN=ERG19 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.802e-14
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  205 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKRRKFLLEGEGTR 420
            +A  P NIA +KYWGKRD++L LP N SISVTL  + L T T+VA S  F +D++WLNGK     LE E T+
Sbjct:    7 SATAPVNIATLKYWGKRDKSLNLPTNSSISVTLSQNDLRTLTSVAASEDFKEDKLWLNGKLES--LESERTK 76          
BLAST of EY692835 vs. ExPASy Swiss-Prot
Match: ERG19_YEAST (Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae GN=ERG19 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.626e-13
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  193 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK 384
            V   +   P NIA +KYWGKRD  L LP N SISVTL  D L T T+ A +P F++D +WLNG+
Sbjct:    3 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGE 66          
The following BLAST results are available for this feature:
BLAST of EY692835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ERG19_BOVIN1.250e-1962.86Diphosphomevalonate decarboxylase OS=Bos taurus GN... [more]
ERG19_MOUSE2.749e-1967.61Diphosphomevalonate decarboxylase OS=Mus musculus ... [more]
ERG19_RAT1.023e-1866.20Diphosphomevalonate decarboxylase OS=Rattus norveg... [more]
ERG19_HUMAN1.729e-1861.43Diphosphomevalonate decarboxylase OS=Homo sapiens ... [more]
ERG19_DANRE3.061e-1870.31Diphosphomevalonate decarboxylase OS=Danio rerio G... [more]
ERG19_DICDI7.225e-1658.06Diphosphomevalonate decarboxylase OS=Dictyostelium... [more]
ERG19_SCHPO7.802e-1457.58Diphosphomevalonate decarboxylase OS=Schizosacchar... [more]
ERG19_DEBHA7.802e-1454.17Diphosphomevalonate decarboxylase OS=Debaryomyces ... [more]
ERG19_YEAST8.626e-1353.13Diphosphomevalonate decarboxylase OS=Saccharomyces... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-A01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692835 ID=EY692835; Name=EY692835; organism=Citrus sinensis; type=EST; length=948bp
CCACGCGTCCGCGCACACTCACAACTACAAACACAGAGTGGCACGCACTT
GCGTTTCTGTTAACTACATTCTCACTTCGGATTCGGAATCGAAACGAAAC
GTTTTTTTTTTCCTTTTCCTTTAGAGTGAGGAGGAGCCTGTTTCGTTAAC
GTTTTAGAATTTTTTTTCATAACGATGGCGGCGGAGAAATGGGTACTGAT
GGTGACGGCGCAGACGCCGACGAACATAGCTGTGATAAAGTACTGGGGGA
AGCGAGACGAAACCCTAATTTTGCCTGTCAATGATAGCATCAGCGTCACC
CTTGATCCCGATCACCTCTGTACTACCACGACCGTTGCCGTCAGTCCTAG
CTTTGACCAAGATCGTATGTGGCTCAATGGCAAACGTAGGAAATTTCTCT
TGGAGGGGGAAGGTACCAGAATTGTTTGAAGGAAATTCGGAGTCGTGCTT
GTGATGTTGAGGACAAGGAGAAAGGGATCAAGATTGAGAAGAAGGACTGG
CAGAAATTGCATTTACACATTGCTTCGTTTAACATTTTCCGACGGCCGCT
GGATTGGCTTCCTCTGCTGCTGGTTTTGCCTGCCTTNGGGTATATGNTGA
TTTTATTAACCAAATGCTATCTATTTATTNGGATTATAGCTTTTGTTTCA
AAGAAAGTTTTAGGGNATATCGGGGNNATATGNTCTTTTTCTTTTCTTTT
TGGGTTTTATGCAGTTTTTTCACTGGCTAAGCTGATGAATTTGAAAGAAA
TCGAGCCAGCTTTCTGCTATAACTAGGCAAGGNTCAGGCAGGGCTTGTCN
AANNCTGTTTGGTGGATTTGTCAAGGGGATATGGGAAAGAAAGAAATGGA
AGTGACAGCTTGCAGTTCACTTGTTGATGAGAGCAACTGGATGATCTTGN
NTATATATTGCTGGGGGAGGTCCGGCAGAAAGGAACAGTACACCCCGG
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